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Cluster: HRGMv2_2993_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2993_4 HRGMv2_2993_4_13 10778 11983 + 3.A.1.11.8
TC HRGMv2_2993_4 HRGMv2_2993_4_14 11973 12827 + 3.A.1.11.8
TC HRGMv2_2993_4 HRGMv2_2993_4_15 12824 13687 + 3.A.1.11.8
TC HRGMv2_2993_4 HRGMv2_2993_4_16 13747 14835 + 3.A.1.11.7
TC HRGMv2_2993_4 HRGMv2_2993_4_17 15115 16473 + 3.A.1.1.45
TC HRGMv2_2993_4 HRGMv2_2993_4_18 16580 17431 + 3.A.1.1.45
TC HRGMv2_2993_4 HRGMv2_2993_4_19 17431 18276 + 3.A.1.1.45
TF HRGMv2_2993_4 HRGMv2_2993_4_20 18293 19336 + LacI
CAZyme HRGMv2_2993_4 HRGMv2_2993_4_21 19333 20829 + GH77
Gene ID: HRGMv2_2993_4_13
Type: TC
Location: 10778 - 11983 (+)
Gene ID: HRGMv2_2993_4_14
Type: TC
Location: 11973 - 12827 (+)
Gene ID: HRGMv2_2993_4_15
Type: TC
Location: 12824 - 13687 (+)
Gene ID: HRGMv2_2993_4_16
Type: TC
Location: 13747 - 14835 (+)
Gene ID: HRGMv2_2993_4_17
Type: TC
Location: 15115 - 16473 (+)
Gene ID: HRGMv2_2993_4_18
Type: TC
Location: 16580 - 17431 (+)
Gene ID: HRGMv2_2993_4_19
Type: TC
Location: 17431 - 18276 (+)
Gene ID: HRGMv2_2993_4_20
Type: TF
Location: 18293 - 19336 (+)
Gene ID: HRGMv2_2993_4_21
Type: CAZyme
Location: 19333 - 20829 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2993_4_15 vegetarian > vegan 1.00594 0.00455

🧭 Explore Read Mapping of CGC

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