Cluster: HRGMv2_2990_CGC2
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2990
- CGC Family ID: CGCFAM_06380
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2990_2 | HRGMv2_2990_2_68 | 71378 | 72388 | + | 9.B.146.1.6 |
| TC | HRGMv2_2990_2 | HRGMv2_2990_2_69 | 72428 | 73648 | + | 2.A.103.1.3 |
| CAZyme | HRGMv2_2990_2 | HRGMv2_2990_2_70 | 73645 | 74772 | + | GT28 |
| CAZyme | HRGMv2_2990_2 | HRGMv2_2990_2_71 | 74862 | 76673 | - | GH13_39 |
| CAZyme | HRGMv2_2990_2 | HRGMv2_2990_2_72 | 76678 | 79080 | - | GT35 |
| CAZyme | HRGMv2_2990_2 | HRGMv2_2990_2_73 | 79103 | 80542 | - | GT5 |
| pfam | HRGMv2_2990_2 | HRGMv2_2990_2_74 | 80539 | 81657 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2990_2 | HRGMv2_2990_2_75 | 81682 | 82866 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2990_2 | HRGMv2_2990_2_76 | 82886 | 84763 | - | GH13_9 |
| STP | HRGMv2_2990_2 | HRGMv2_2990_2_77 | 84942 | 86192 | + | EPSP_synthase |
| TF | HRGMv2_2990_2 | HRGMv2_2990_2_78 | 86424 | 86771 | - | HTH_3 |
| CAZyme | HRGMv2_2990_2 | HRGMv2_2990_2_79 | 87043 | 89163 | - | GH89 |
Gene ID: HRGMv2_2990_2_68
Type: TC
Location: 71378 - 72388 (+)
Type: TC
Location: 71378 - 72388 (+)
Gene ID: HRGMv2_2990_2_69
Type: TC
Location: 72428 - 73648 (+)
Type: TC
Location: 72428 - 73648 (+)
Gene ID: HRGMv2_2990_2_70
Type: CAZyme
Location: 73645 - 74772 (+)
Type: CAZyme
Location: 73645 - 74772 (+)
Gene ID: HRGMv2_2990_2_71
Type: CAZyme
Location: 74862 - 76673 (-)
Type: CAZyme
Location: 74862 - 76673 (-)
Gene ID: HRGMv2_2990_2_72
Type: CAZyme
Location: 76678 - 79080 (-)
Type: CAZyme
Location: 76678 - 79080 (-)
Gene ID: HRGMv2_2990_2_73
Type: CAZyme
Location: 79103 - 80542 (-)
Type: CAZyme
Location: 79103 - 80542 (-)
Gene ID: HRGMv2_2990_2_74
Type: pfam
Location: 80539 - 81657 (-)
Type: pfam
Location: 80539 - 81657 (-)
Gene ID: HRGMv2_2990_2_75
Type: pfam
Location: 81682 - 82866 (-)
Type: pfam
Location: 81682 - 82866 (-)
Gene ID: HRGMv2_2990_2_76
Type: CAZyme
Location: 82886 - 84763 (-)
Type: CAZyme
Location: 82886 - 84763 (-)
Gene ID: HRGMv2_2990_2_77
Type: STP
Location: 84942 - 86192 (+)
Type: STP
Location: 84942 - 86192 (+)
Gene ID: HRGMv2_2990_2_78
Type: TF
Location: 86424 - 86771 (-)
Type: TF
Location: 86424 - 86771 (-)
Gene ID: HRGMv2_2990_2_79
Type: CAZyme
Location: 87043 - 89163 (-)
Type: CAZyme
Location: 87043 - 89163 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
UBA644
Genus
HGM12619
Species
HGM12619 sp900753195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.