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Cluster: HRGMv2_2987_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2987_32 HRGMv2_2987_32_4 3381 4703 + GH4
STP HRGMv2_2987_32 HRGMv2_2987_32_5 4830 6446 - Pkinase
pfam HRGMv2_2987_32 HRGMv2_2987_32_6 6778 7641 - F_bP_aldolase
TC HRGMv2_2987_32 HRGMv2_2987_32_7 7798 8838 - 3.A.1.2.1
TC HRGMv2_2987_32 HRGMv2_2987_32_8 8835 10322 - 3.A.1.2.19
STP HRGMv2_2987_32 HRGMv2_2987_32_9 10417 11463 - Peripla_BP_1
pfam HRGMv2_2987_32 HRGMv2_2987_32_10 11730 12569 - VCA0040-like
TC HRGMv2_2987_32 HRGMv2_2987_32_11 12569 13252 - 2.A.38.4.6
TC HRGMv2_2987_32 HRGMv2_2987_32_12 13267 14565 - 2.A.38.4.5
Gene ID: HRGMv2_2987_32_4
Type: CAZyme
Location: 3381 - 4703 (+)
Gene ID: HRGMv2_2987_32_5
Type: STP
Location: 4830 - 6446 (-)
Gene ID: HRGMv2_2987_32_6
Type: pfam
Location: 6778 - 7641 (-)
Gene ID: HRGMv2_2987_32_7
Type: TC
Location: 7798 - 8838 (-)
Gene ID: HRGMv2_2987_32_8
Type: TC
Location: 8835 - 10322 (-)
Gene ID: HRGMv2_2987_32_9
Type: STP
Location: 10417 - 11463 (-)
Gene ID: HRGMv2_2987_32_10
Type: pfam
Location: 11730 - 12569 (-)
Gene ID: HRGMv2_2987_32_11
Type: TC
Location: 12569 - 13252 (-)
Gene ID: HRGMv2_2987_32_12
Type: TC
Location: 13267 - 14565 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2987_32_6 vegan > vegetarian 1.49403 0.04735

🧭 Explore Read Mapping of CGC

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