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Cluster: HRGMv2_2987_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2987_22 HRGMv2_2987_22_19 15422 16000 + 9.B.156.3.1
TC HRGMv2_2987_22 HRGMv2_2987_22_20 16044 16562 + 9.B.156.3.1
pfam HRGMv2_2987_22 HRGMv2_2987_22_21 16631 17401 + Pan_kinase
CAZyme HRGMv2_2987_22 HRGMv2_2987_22_22 17601 19409 + GH13_31
TC HRGMv2_2987_22 HRGMv2_2987_22_23 19560 20600 + 4.D.2.1.5
pfam HRGMv2_2987_22 HRGMv2_2987_22_24 20665 21894 - YibE_F
pfam HRGMv2_2987_22 HRGMv2_2987_22_25 22006 23643 - Alk_phosphatase | Alk_phosphatase
TC HRGMv2_2987_22 HRGMv2_2987_22_26 23931 24647 + 3.A.1.147.6
NULL(UNKNOWN) HRGMv2_2987_22 HRGMv2_2987_22_27 24644 24766 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2987_22 HRGMv2_2987_22_28 24795 26225 + 3.A.1.147.6
CAZyme HRGMv2_2987_22 HRGMv2_2987_22_29 26394 27485 + GH5_44
TF HRGMv2_2987_22 HRGMv2_2987_22_30 27717 29291 + HTH_AraC | HTH_AraC
TC HRGMv2_2987_22 HRGMv2_2987_22_31 29288 31117 + 8.A.59.2.1
TC HRGMv2_2987_22 HRGMv2_2987_22_32 31444 32604 + 3.A.1.1.29
CAZyme HRGMv2_2987_22 HRGMv2_2987_22_33 32623 33966 + GH30_2
STP HRGMv2_2987_22 HRGMv2_2987_22_34 34168 35094 + PfkB
TC HRGMv2_2987_22 HRGMv2_2987_22_35 35087 36028 + 2.A.69.3.6
Gene ID: HRGMv2_2987_22_19
Type: TC
Location: 15422 - 16000 (+)
Gene ID: HRGMv2_2987_22_20
Type: TC
Location: 16044 - 16562 (+)
Gene ID: HRGMv2_2987_22_21
Type: pfam
Location: 16631 - 17401 (+)
Gene ID: HRGMv2_2987_22_22
Type: CAZyme
Location: 17601 - 19409 (+)
Gene ID: HRGMv2_2987_22_23
Type: TC
Location: 19560 - 20600 (+)
Gene ID: HRGMv2_2987_22_24
Type: pfam
Location: 20665 - 21894 (-)
Gene ID: HRGMv2_2987_22_25
Type: pfam
Location: 22006 - 23643 (-)
Gene ID: HRGMv2_2987_22_26
Type: TC
Location: 23931 - 24647 (+)
Gene ID: HRGMv2_2987_22_27
Type:
Location: 24644 - 24766 (+)
Gene ID: HRGMv2_2987_22_28
Type: TC
Location: 24795 - 26225 (+)
Gene ID: HRGMv2_2987_22_29
Type: CAZyme
Location: 26394 - 27485 (+)
Gene ID: HRGMv2_2987_22_30
Type: TF
Location: 27717 - 29291 (+)
Gene ID: HRGMv2_2987_22_31
Type: TC
Location: 29288 - 31117 (+)
Gene ID: HRGMv2_2987_22_32
Type: TC
Location: 31444 - 32604 (+)
Gene ID: HRGMv2_2987_22_33
Type: CAZyme
Location: 32623 - 33966 (+)
Gene ID: HRGMv2_2987_22_34
Type: STP
Location: 34168 - 35094 (+)
Gene ID: HRGMv2_2987_22_35
Type: TC
Location: 35087 - 36028 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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