Cluster: HRGMv2_2986_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2986
- CGC Family ID: CGCFAM_02879
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2986_11 | HRGMv2_2986_11_3 | 1868 | 3283 | - | 9.A.11.1.2 |
| TF | HRGMv2_2986_11 | HRGMv2_2986_11_4 | 3763 | 4029 | + | 0043707 |
| NULL(UNKNOWN) | HRGMv2_2986_11 | HRGMv2_2986_11_5 | 4083 | 4223 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2986_11 | HRGMv2_2986_11_6 | 4301 | 5104 | - | CE4 |
| TC | HRGMv2_2986_11 | HRGMv2_2986_11_7 | 5375 | 6925 | + | 2.A.22.5.3 |
| TC | HRGMv2_2986_11 | HRGMv2_2986_11_8 | 7036 | 8406 | + | 2.A.66.1.22 |
Gene ID: HRGMv2_2986_11_3
Type: TC
Location: 1868 - 3283 (-)
Type: TC
Location: 1868 - 3283 (-)
Gene ID: HRGMv2_2986_11_4
Type: TF
Location: 3763 - 4029 (+)
Type: TF
Location: 3763 - 4029 (+)
Gene ID: HRGMv2_2986_11_5
Type:
Location: 4083 - 4223 (-)
Type:
Location: 4083 - 4223 (-)
Gene ID: HRGMv2_2986_11_6
Type: CAZyme
Location: 4301 - 5104 (-)
Type: CAZyme
Location: 4301 - 5104 (-)
Gene ID: HRGMv2_2986_11_7
Type: TC
Location: 5375 - 6925 (+)
Type: TC
Location: 5375 - 6925 (+)
Gene ID: HRGMv2_2986_11_8
Type: TC
Location: 7036 - 8406 (+)
Type: TC
Location: 7036 - 8406 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900553545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2986_11_3 | vegetarian > vegan | 1.18391 | 0.00050 |
| HRGMv2_2986_11_4 | vegetarian > vegan | 1.55770 | 0.00050 |
| HRGMv2_2986_11_5 | vegetarian > vegan | 1.44402 | 0.00050 |
| HRGMv2_2986_11_6 | vegetarian > vegan | 1.25675 | 0.00050 |