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Cluster: HRGMv2_2986_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2986_5 HRGMv2_2986_5_17 20133 22238 - GH3
TF HRGMv2_2986_5 HRGMv2_2986_5_18 22428 23114 + Trans_reg_C
STP HRGMv2_2986_5 HRGMv2_2986_5_19 23117 24544 + HATPase_c | HisKA
TC HRGMv2_2986_5 HRGMv2_2986_5_20 24942 26270 + 9.B.160.1.10
pfam HRGMv2_2986_5 HRGMv2_2986_5_21 26516 26845 - Cupin_2
TF HRGMv2_2986_5 HRGMv2_2986_5_22 26978 27592 - 0036286
TC HRGMv2_2986_5 HRGMv2_2986_5_23 27589 28614 - 8.A.59.2.1
Gene ID: HRGMv2_2986_5_17
Type: CAZyme
Location: 20133 - 22238 (-)
Gene ID: HRGMv2_2986_5_18
Type: TF
Location: 22428 - 23114 (+)
Gene ID: HRGMv2_2986_5_19
Type: STP
Location: 23117 - 24544 (+)
Gene ID: HRGMv2_2986_5_20
Type: TC
Location: 24942 - 26270 (+)
Gene ID: HRGMv2_2986_5_21
Type: pfam
Location: 26516 - 26845 (-)
Gene ID: HRGMv2_2986_5_22
Type: TF
Location: 26978 - 27592 (-)
Gene ID: HRGMv2_2986_5_23
Type: TC
Location: 27589 - 28614 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2986_5_17 vegetarian > vegan 1.50544 0.00050
HRGMv2_2986_5_21 vegetarian > vegan 1.50775 0.00050

🧭 Explore Read Mapping of CGC

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