Cluster: HRGMv2_2986_CGC1
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2986
- CGC Family ID: CGCFAM_07863
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2986_3 | HRGMv2_2986_3_30 | 19013 | 21334 | - | GT35 |
| NULL(UNKNOWN) | HRGMv2_2986_3 | HRGMv2_2986_3_31 | 21486 | 21635 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2986_3 | HRGMv2_2986_3_32 | 21572 | 23056 | - | GH77 |
| TF | HRGMv2_2986_3 | HRGMv2_2986_3_33 | 23070 | 24107 | - | LacI |
| TC | HRGMv2_2986_3 | HRGMv2_2986_3_34 | 24104 | 24967 | - | 3.A.1.1.45 |
| TC | HRGMv2_2986_3 | HRGMv2_2986_3_35 | 24967 | 25875 | - | 3.A.1.1.45 |
| TC | HRGMv2_2986_3 | HRGMv2_2986_3_36 | 26041 | 27432 | - | 3.A.1.1.45 |
| pfam | HRGMv2_2986_3 | HRGMv2_2986_3_37 | 27890 | 28921 | - | Gp_dh_N | Gp_dh_C |
| TC | HRGMv2_2986_3 | HRGMv2_2986_3_38 | 29266 | 32217 | + | 3.A.1.122.2 |
| TC | HRGMv2_2986_3 | HRGMv2_2986_3_39 | 32474 | 33865 | - | 9.B.160.1.10 |
| TC | HRGMv2_2986_3 | HRGMv2_2986_3_40 | 33869 | 36496 | - | 3.A.1.32.2 |
| TC | HRGMv2_2986_3 | HRGMv2_2986_3_41 | 36484 | 37359 | - | 3.A.1.32.2 |
Gene ID: HRGMv2_2986_3_30
Type: CAZyme
Location: 19013 - 21334 (-)
Type: CAZyme
Location: 19013 - 21334 (-)
Gene ID: HRGMv2_2986_3_31
Type:
Location: 21486 - 21635 (+)
Type:
Location: 21486 - 21635 (+)
Gene ID: HRGMv2_2986_3_32
Type: CAZyme
Location: 21572 - 23056 (-)
Type: CAZyme
Location: 21572 - 23056 (-)
Gene ID: HRGMv2_2986_3_33
Type: TF
Location: 23070 - 24107 (-)
Type: TF
Location: 23070 - 24107 (-)
Gene ID: HRGMv2_2986_3_34
Type: TC
Location: 24104 - 24967 (-)
Type: TC
Location: 24104 - 24967 (-)
Gene ID: HRGMv2_2986_3_35
Type: TC
Location: 24967 - 25875 (-)
Type: TC
Location: 24967 - 25875 (-)
Gene ID: HRGMv2_2986_3_36
Type: TC
Location: 26041 - 27432 (-)
Type: TC
Location: 26041 - 27432 (-)
Gene ID: HRGMv2_2986_3_37
Type: pfam
Location: 27890 - 28921 (-)
Type: pfam
Location: 27890 - 28921 (-)
Gene ID: HRGMv2_2986_3_38
Type: TC
Location: 29266 - 32217 (+)
Type: TC
Location: 29266 - 32217 (+)
Gene ID: HRGMv2_2986_3_39
Type: TC
Location: 32474 - 33865 (-)
Type: TC
Location: 32474 - 33865 (-)
Gene ID: HRGMv2_2986_3_40
Type: TC
Location: 33869 - 36496 (-)
Type: TC
Location: 33869 - 36496 (-)
Gene ID: HRGMv2_2986_3_41
Type: TC
Location: 36484 - 37359 (-)
Type: TC
Location: 36484 - 37359 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp900553545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2986_3_31 | vegetarian > vegan | 1.77925 | 0.00050 |
| HRGMv2_2986_3_33 | vegetarian > vegan | 1.09104 | 0.00050 |
| HRGMv2_2986_3_39 | vegetarian > vegan | 1.01331 | 0.00050 |
| HRGMv2_2986_3_41 | vegetarian > vegan | 1.15019 | 0.00050 |