Cluster: HRGMv2_2984_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2984
- CGC Family ID: CGCFAM_00045
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2984_2 | HRGMv2_2984_2_324 | 319314 | 320582 | + | 3.A.1.1.2 |
| TC | HRGMv2_2984_2 | HRGMv2_2984_2_325 | 320638 | 321522 | + | 3.A.1.1.2 |
| TC | HRGMv2_2984_2 | HRGMv2_2984_2_326 | 321525 | 322367 | + | 3.A.1.1.2 |
| CAZyme | HRGMv2_2984_2 | HRGMv2_2984_2_327 | 322370 | 324040 | + | CBM34 | GH13_20 |
Gene ID: HRGMv2_2984_2_324
Type: TC
Location: 319314 - 320582 (+)
Type: TC
Location: 319314 - 320582 (+)
Gene ID: HRGMv2_2984_2_325
Type: TC
Location: 320638 - 321522 (+)
Type: TC
Location: 320638 - 321522 (+)
Gene ID: HRGMv2_2984_2_326
Type: TC
Location: 321525 - 322367 (+)
Type: TC
Location: 321525 - 322367 (+)
Gene ID: HRGMv2_2984_2_327
Type: CAZyme
Location: 322370 - 324040 (+)
Type: CAZyme
Location: 322370 - 324040 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Scatomorpha
Species
Scatomorpha sp900759385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2984_2_324 | vegetarian > vegan | 4.28606 | 0.00863 |
| HRGMv2_2984_2_325 | vegetarian > omnivore | 1.34351 | 0.00229 |
| HRGMv2_2984_2_325 | vegetarian > vegan | 2.79304 | 0.00863 |
| HRGMv2_2984_2_326 | vegetarian > vegan | 2.85425 | 0.00863 |
| HRGMv2_2984_2_327 | vegetarian > vegan | 2.81653 | 0.00863 |