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Cluster: HRGMv2_2984_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2984_1 HRGMv2_2984_1_35 34890 36602 - GH2
TC HRGMv2_2984_1 HRGMv2_2984_1_36 36927 38330 + 3.D.6.1.2
TC HRGMv2_2984_1 HRGMv2_2984_1_37 38330 39367 + 3.D.6.1.2
TC HRGMv2_2984_1 HRGMv2_2984_1_38 39364 39918 + 3.D.6.1.3
TC HRGMv2_2984_1 HRGMv2_2984_1_39 39931 40647 + 3.D.6.1.2
TC HRGMv2_2984_1 HRGMv2_2984_1_40 40647 41225 + 3.D.6.1.2
TC HRGMv2_2984_1 HRGMv2_2984_1_41 41238 42062 + 3.D.6.1.3
Gene ID: HRGMv2_2984_1_35
Type: CAZyme
Location: 34890 - 36602 (-)
Gene ID: HRGMv2_2984_1_36
Type: TC
Location: 36927 - 38330 (+)
Gene ID: HRGMv2_2984_1_37
Type: TC
Location: 38330 - 39367 (+)
Gene ID: HRGMv2_2984_1_38
Type: TC
Location: 39364 - 39918 (+)
Gene ID: HRGMv2_2984_1_39
Type: TC
Location: 39931 - 40647 (+)
Gene ID: HRGMv2_2984_1_40
Type: TC
Location: 40647 - 41225 (+)
Gene ID: HRGMv2_2984_1_41
Type: TC
Location: 41238 - 42062 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2984_1_36 vegetarian > vegan 1.37941 0.00863

🧭 Explore Read Mapping of CGC

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