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Cluster: HRGMv2_2983_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2983_8 HRGMv2_2983_8_40 43654 44691 - 3.A.1.1.16
pfam HRGMv2_2983_8 HRGMv2_2983_8_41 44791 46068 - SBP_bac_8
TF HRGMv2_2983_8 HRGMv2_2983_8_42 46251 46997 - HTH_AraC | HTH_AraC
TC HRGMv2_2983_8 HRGMv2_2983_8_43 46972 48675 - 8.A.59.2.1
TC HRGMv2_2983_8 HRGMv2_2983_8_44 48672 49670 - 3.A.1.20.1
TC HRGMv2_2983_8 HRGMv2_2983_8_45 49787 50863 - 3.A.1.11.8
TC HRGMv2_2983_8 HRGMv2_2983_8_46 50867 52579 - 3.A.1.20.3
STP HRGMv2_2983_8 HRGMv2_2983_8_47 52693 53829 - SBP_bac_1
CAZyme HRGMv2_2983_8 HRGMv2_2983_8_48 54160 55530 - GT4
STP HRGMv2_2983_8 HRGMv2_2983_8_49 55707 56072 + Glyoxalase
pfam HRGMv2_2983_8 HRGMv2_2983_8_50 56106 56642 + Isochorismatase
TC HRGMv2_2983_8 HRGMv2_2983_8_51 56643 58130 + 2.A.2.2.3
CAZyme HRGMv2_2983_8 HRGMv2_2983_8_52 58127 58900 + CE14
Gene ID: HRGMv2_2983_8_40
Type: TC
Location: 43654 - 44691 (-)
Gene ID: HRGMv2_2983_8_41
Type: pfam
Location: 44791 - 46068 (-)
Gene ID: HRGMv2_2983_8_42
Type: TF
Location: 46251 - 46997 (-)
Gene ID: HRGMv2_2983_8_43
Type: TC
Location: 46972 - 48675 (-)
Gene ID: HRGMv2_2983_8_44
Type: TC
Location: 48672 - 49670 (-)
Gene ID: HRGMv2_2983_8_45
Type: TC
Location: 49787 - 50863 (-)
Gene ID: HRGMv2_2983_8_46
Type: TC
Location: 50867 - 52579 (-)
Gene ID: HRGMv2_2983_8_47
Type: STP
Location: 52693 - 53829 (-)
Gene ID: HRGMv2_2983_8_48
Type: CAZyme
Location: 54160 - 55530 (-)
Gene ID: HRGMv2_2983_8_49
Type: STP
Location: 55707 - 56072 (+)
Gene ID: HRGMv2_2983_8_50
Type: pfam
Location: 56106 - 56642 (+)
Gene ID: HRGMv2_2983_8_51
Type: TC
Location: 56643 - 58130 (+)
Gene ID: HRGMv2_2983_8_52
Type: CAZyme
Location: 58127 - 58900 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2983_8_41 vegetarian > vegan 1.09678 0.01057

🧭 Explore Read Mapping of CGC

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