Cluster: HRGMv2_2983_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2983
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2983_4 | HRGMv2_2983_4_16 | 16170 | 17213 | - | GT2 |
| pfam | HRGMv2_2983_4 | HRGMv2_2983_4_17 | 17229 | 17903 | - | DUF2461 |
| TC | HRGMv2_2983_4 | HRGMv2_2983_4_18 | 18094 | 19458 | + | 2.A.38.1.1 |
| TC | HRGMv2_2983_4 | HRGMv2_2983_4_19 | 19455 | 20891 | + | 2.A.38.1.1 |
| TC | HRGMv2_2983_4 | HRGMv2_2983_4_20 | 20965 | 22401 | + | 2.A.38.1.1 |
Gene ID: HRGMv2_2983_4_16
Type: CAZyme
Location: 16170 - 17213 (-)
Type: CAZyme
Location: 16170 - 17213 (-)
Gene ID: HRGMv2_2983_4_17
Type: pfam
Location: 17229 - 17903 (-)
Type: pfam
Location: 17229 - 17903 (-)
Gene ID: HRGMv2_2983_4_18
Type: TC
Location: 18094 - 19458 (+)
Type: TC
Location: 18094 - 19458 (+)
Gene ID: HRGMv2_2983_4_19
Type: TC
Location: 19455 - 20891 (+)
Type: TC
Location: 19455 - 20891 (+)
Gene ID: HRGMv2_2983_4_20
Type: TC
Location: 20965 - 22401 (+)
Type: TC
Location: 20965 - 22401 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900754515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.