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Cluster: HRGMv2_2983_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2983_3 HRGMv2_2983_3_53 59126 60244 + 3.A.1.11.8
TC HRGMv2_2983_3 HRGMv2_2983_3_54 60241 61119 + 3.A.1.11.2
TC HRGMv2_2983_3 HRGMv2_2983_3_55 61134 61976 + 3.A.1.11.2
TC HRGMv2_2983_3 HRGMv2_2983_3_56 61993 63099 + 3.A.1.11.7
STP HRGMv2_2983_3 HRGMv2_2983_3_57 63479 64864 + PALP
CAZyme HRGMv2_2983_3 HRGMv2_2983_3_58 65002 66183 - GT1
TF HRGMv2_2983_3 HRGMv2_2983_3_59 66183 66401 - SpoVT_AbrB
TC HRGMv2_2983_3 HRGMv2_2983_3_60 66532 67545 + 9.A.11.1.1
Gene ID: HRGMv2_2983_3_53
Type: TC
Location: 59126 - 60244 (+)
Gene ID: HRGMv2_2983_3_54
Type: TC
Location: 60241 - 61119 (+)
Gene ID: HRGMv2_2983_3_55
Type: TC
Location: 61134 - 61976 (+)
Gene ID: HRGMv2_2983_3_56
Type: TC
Location: 61993 - 63099 (+)
Gene ID: HRGMv2_2983_3_57
Type: STP
Location: 63479 - 64864 (+)
Gene ID: HRGMv2_2983_3_58
Type: CAZyme
Location: 65002 - 66183 (-)
Gene ID: HRGMv2_2983_3_59
Type: TF
Location: 66183 - 66401 (-)
Gene ID: HRGMv2_2983_3_60
Type: TC
Location: 66532 - 67545 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2983_3_56 vegetarian > omnivore 1.61315 0.01681

🧭 Explore Read Mapping of CGC

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