Cluster: HRGMv2_2983_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2983
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2983_1 | HRGMv2_2983_1_148 | 159402 | 161711 | + | GT51 |
| NULL(UNKNOWN) | HRGMv2_2983_1 | HRGMv2_2983_1_149 | 161864 | 162145 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2983_1 | HRGMv2_2983_1_150 | 162169 | 163758 | + | 3.A.7.14.2 |
Gene ID: HRGMv2_2983_1_148
Type: CAZyme
Location: 159402 - 161711 (+)
Type: CAZyme
Location: 159402 - 161711 (+)
Gene ID: HRGMv2_2983_1_149
Type:
Location: 161864 - 162145 (+)
Type:
Location: 161864 - 162145 (+)
Gene ID: HRGMv2_2983_1_150
Type: TC
Location: 162169 - 163758 (+)
Type: TC
Location: 162169 - 163758 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900754515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2983_1_149 | vegetarian > omnivore | 2.26655 | 0.01681 |
| HRGMv2_2983_1_149 | vegetarian > vegan | 4.79978 | 0.01057 |