Cluster: HRGMv2_2983_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2983
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2983_39 | HRGMv2_2983_39_12 | 12170 | 14572 | + | GT35 |
| STP | HRGMv2_2983_39 | HRGMv2_2983_39_13 | 14557 | 15471 | + | PfkB |
| STP | HRGMv2_2983_39 | HRGMv2_2983_39_14 | 15489 | 17438 | + | PIG-L |
| TC | HRGMv2_2983_39 | HRGMv2_2983_39_15 | 17435 | 18505 | + | 9.A.23.1.1 |
Gene ID: HRGMv2_2983_39_12
Type: CAZyme
Location: 12170 - 14572 (+)
Type: CAZyme
Location: 12170 - 14572 (+)
Gene ID: HRGMv2_2983_39_13
Type: STP
Location: 14557 - 15471 (+)
Type: STP
Location: 14557 - 15471 (+)
Gene ID: HRGMv2_2983_39_14
Type: STP
Location: 15489 - 17438 (+)
Type: STP
Location: 15489 - 17438 (+)
Gene ID: HRGMv2_2983_39_15
Type: TC
Location: 17435 - 18505 (+)
Type: TC
Location: 17435 - 18505 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900754515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2983_39_12 | vegetarian > omnivore | 1.26295 | 0.01681 |
| HRGMv2_2983_39_12 | vegetarian > vegan | 1.44131 | 0.01057 |