Cluster: HRGMv2_2983_CGC14
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2983
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2983_28 | HRGMv2_2983_28_17 | 18698 | 25735 | - | GH94 | GT84 |
| TF | HRGMv2_2983_28 | HRGMv2_2983_28_18 | 25941 | 26297 | + | HTH_11 |
| TC | HRGMv2_2983_28 | HRGMv2_2983_28_19 | 26301 | 27668 | + | 3.A.5.1.1 |
Gene ID: HRGMv2_2983_28_17
Type: CAZyme
Location: 18698 - 25735 (-)
Type: CAZyme
Location: 18698 - 25735 (-)
Gene ID: HRGMv2_2983_28_18
Type: TF
Location: 25941 - 26297 (+)
Type: TF
Location: 25941 - 26297 (+)
Gene ID: HRGMv2_2983_28_19
Type: TC
Location: 26301 - 27668 (+)
Type: TC
Location: 26301 - 27668 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900754515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2983_28_19 | vegetarian > vegan | 1.06976 | 0.01057 |