Cluster: HRGMv2_2983_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2983
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2983_15 | HRGMv2_2983_15_12 | 11539 | 12525 | - | GH179 |
| pfam | HRGMv2_2983_15 | HRGMv2_2983_15_13 | 12536 | 13351 | - | AP_endonuc_2 |
| pfam | HRGMv2_2983_15 | HRGMv2_2983_15_14 | 13364 | 14287 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_2983_15 | HRGMv2_2983_15_15 | 14306 | 15349 | - | GH179 |
| TC | HRGMv2_2983_15 | HRGMv2_2983_15_16 | 15369 | 16418 | - | 3.A.1.2.15 |
| TC | HRGMv2_2983_15 | HRGMv2_2983_15_17 | 16409 | 17902 | - | 3.A.1.2.20 |
Gene ID: HRGMv2_2983_15_12
Type: CAZyme
Location: 11539 - 12525 (-)
Type: CAZyme
Location: 11539 - 12525 (-)
Gene ID: HRGMv2_2983_15_13
Type: pfam
Location: 12536 - 13351 (-)
Type: pfam
Location: 12536 - 13351 (-)
Gene ID: HRGMv2_2983_15_14
Type: pfam
Location: 13364 - 14287 (-)
Type: pfam
Location: 13364 - 14287 (-)
Gene ID: HRGMv2_2983_15_15
Type: CAZyme
Location: 14306 - 15349 (-)
Type: CAZyme
Location: 14306 - 15349 (-)
Gene ID: HRGMv2_2983_15_16
Type: TC
Location: 15369 - 16418 (-)
Type: TC
Location: 15369 - 16418 (-)
Gene ID: HRGMv2_2983_15_17
Type: TC
Location: 16409 - 17902 (-)
Type: TC
Location: 16409 - 17902 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900754515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.