Cluster: HRGMv2_2983_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2983
- CGC Family ID: CGCFAM_10267
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2983_14 | HRGMv2_2983_14_18 | 15721 | 16707 | - | 9.B.186.1.1 |
| NULL(UNKNOWN) | HRGMv2_2983_14 | HRGMv2_2983_14_19 | 16704 | 17618 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | HRGMv2_2983_14 | HRGMv2_2983_14_20 | 17688 | 19487 | - | M03.UPB |
| CAZyme | HRGMv2_2983_14 | HRGMv2_2983_14_21 | 19618 | 20745 | + | GH18 |
| TF | HRGMv2_2983_14 | HRGMv2_2983_14_22 | 20737 | 21072 | - | HTH_3 |
| NULL(UNKNOWN) | HRGMv2_2983_14 | HRGMv2_2983_14_23 | 21234 | 21431 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2983_14 | HRGMv2_2983_14_24 | 21485 | 22057 | - | 4.F.1.1.8 |
Gene ID: HRGMv2_2983_14_18
Type: TC
Location: 15721 - 16707 (-)
Type: TC
Location: 15721 - 16707 (-)
Gene ID: HRGMv2_2983_14_19
Type:
Location: 16704 - 17618 (-)
Type:
Location: 16704 - 17618 (-)
Gene ID: HRGMv2_2983_14_20
Type: peptidase
Location: 17688 - 19487 (-)
Type: peptidase
Location: 17688 - 19487 (-)
Gene ID: HRGMv2_2983_14_21
Type: CAZyme
Location: 19618 - 20745 (+)
Type: CAZyme
Location: 19618 - 20745 (+)
Gene ID: HRGMv2_2983_14_22
Type: TF
Location: 20737 - 21072 (-)
Type: TF
Location: 20737 - 21072 (-)
Gene ID: HRGMv2_2983_14_23
Type:
Location: 21234 - 21431 (+)
Type:
Location: 21234 - 21431 (+)
Gene ID: HRGMv2_2983_14_24
Type: TC
Location: 21485 - 22057 (-)
Type: TC
Location: 21485 - 22057 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900754515
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.