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Cluster: HRGMv2_2980_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2980_2 HRGMv2_2980_2_11 11839 13998 + GH112
STP HRGMv2_2980_2 HRGMv2_2980_2_12 14502 15818 + SBP_bac_1
TC HRGMv2_2980_2 HRGMv2_2980_2_13 15942 16883 + 3.A.1.1.20
TC HRGMv2_2980_2 HRGMv2_2980_2_14 16899 17774 + 3.A.1.1.41
TC HRGMv2_2980_2 HRGMv2_2980_2_15 17859 19529 - 3.A.18.1.1
pfam HRGMv2_2980_2 HRGMv2_2980_2_16 19717 20550 - SpoU_methylase
sulfatase HRGMv2_2980_2 HRGMv2_2980_2_17 20644 22443 - S1_15
TC HRGMv2_2980_2 HRGMv2_2980_2_18 22695 23366 - 3.A.1.131.1
Gene ID: HRGMv2_2980_2_11
Type: CAZyme
Location: 11839 - 13998 (+)
Gene ID: HRGMv2_2980_2_12
Type: STP
Location: 14502 - 15818 (+)
Gene ID: HRGMv2_2980_2_13
Type: TC
Location: 15942 - 16883 (+)
Gene ID: HRGMv2_2980_2_14
Type: TC
Location: 16899 - 17774 (+)
Gene ID: HRGMv2_2980_2_15
Type: TC
Location: 17859 - 19529 (-)
Gene ID: HRGMv2_2980_2_16
Type: pfam
Location: 19717 - 20550 (-)
Gene ID: HRGMv2_2980_2_17
Type: sulfatase
Location: 20644 - 22443 (-)
Gene ID: HRGMv2_2980_2_18
Type: TC
Location: 22695 - 23366 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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