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Cluster: HRGMv2_2980_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2980_45 HRGMv2_2980_45_5 3257 4117 - 3.A.1.1.18
pfam HRGMv2_2980_45 HRGMv2_2980_45_6 4133 5023 - BPD_transp_1
STP HRGMv2_2980_45 HRGMv2_2980_45_7 5116 6507 - SBP_bac_1
TC HRGMv2_2980_45 HRGMv2_2980_45_8 6620 8464 - 8.A.59.2.1
pfam HRGMv2_2980_45 HRGMv2_2980_45_9 8580 9992 - PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_2980_45 HRGMv2_2980_45_10 10059 12452 - GH94
peptidase HRGMv2_2980_45 HRGMv2_2980_45_11 12804 13787 - S12.UNW
TF HRGMv2_2980_45 HRGMv2_2980_45_12 13820 14647 - MerR
TC HRGMv2_2980_45 HRGMv2_2980_45_13 14824 16269 - 2.A.22.5.3
CAZyme HRGMv2_2980_45 HRGMv2_2980_45_14 16462 18552 - GH25
Gene ID: HRGMv2_2980_45_5
Type: TC
Location: 3257 - 4117 (-)
Gene ID: HRGMv2_2980_45_6
Type: pfam
Location: 4133 - 5023 (-)
Gene ID: HRGMv2_2980_45_7
Type: STP
Location: 5116 - 6507 (-)
Gene ID: HRGMv2_2980_45_8
Type: TC
Location: 6620 - 8464 (-)
Gene ID: HRGMv2_2980_45_9
Type: pfam
Location: 8580 - 9992 (-)
Gene ID: HRGMv2_2980_45_10
Type: CAZyme
Location: 10059 - 12452 (-)
Gene ID: HRGMv2_2980_45_11
Type: peptidase
Location: 12804 - 13787 (-)
Gene ID: HRGMv2_2980_45_12
Type: TF
Location: 13820 - 14647 (-)
Gene ID: HRGMv2_2980_45_13
Type: TC
Location: 14824 - 16269 (-)
Gene ID: HRGMv2_2980_45_14
Type: CAZyme
Location: 16462 - 18552 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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