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Cluster: HRGMv2_2980_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2980_5 HRGMv2_2980_5_74 75597 77342 + 3.A.1.135.5
TC HRGMv2_2980_5 HRGMv2_2980_5_75 77332 79233 + 3.A.1.135.5
STP HRGMv2_2980_5 HRGMv2_2980_5_76 79681 81090 + SBP_bac_1
TC HRGMv2_2980_5 HRGMv2_2980_5_77 81237 82202 + 3.A.1.1.28
TC HRGMv2_2980_5 HRGMv2_2980_5_78 82218 83087 + 3.A.1.1.34
pfam HRGMv2_2980_5 HRGMv2_2980_5_79 83112 84077 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
CAZyme HRGMv2_2980_5 HRGMv2_2980_5_80 84107 84796 + CE14
TC HRGMv2_2980_5 HRGMv2_2980_5_81 84801 86129 + 2.A.66.1.23
STP HRGMv2_2980_5 HRGMv2_2980_5_82 86178 87083 + SIS
CAZyme HRGMv2_2980_5 HRGMv2_2980_5_83 87098 88252 + GH171
CAZyme HRGMv2_2980_5 HRGMv2_2980_5_84 88276 89826 + GH3
Gene ID: HRGMv2_2980_5_74
Type: TC
Location: 75597 - 77342 (+)
Gene ID: HRGMv2_2980_5_75
Type: TC
Location: 77332 - 79233 (+)
Gene ID: HRGMv2_2980_5_76
Type: STP
Location: 79681 - 81090 (+)
Gene ID: HRGMv2_2980_5_77
Type: TC
Location: 81237 - 82202 (+)
Gene ID: HRGMv2_2980_5_78
Type: TC
Location: 82218 - 83087 (+)
Gene ID: HRGMv2_2980_5_79
Type: pfam
Location: 83112 - 84077 (+)
Gene ID: HRGMv2_2980_5_80
Type: CAZyme
Location: 84107 - 84796 (+)
Gene ID: HRGMv2_2980_5_81
Type: TC
Location: 84801 - 86129 (+)
Gene ID: HRGMv2_2980_5_82
Type: STP
Location: 86178 - 87083 (+)
Gene ID: HRGMv2_2980_5_83
Type: CAZyme
Location: 87098 - 88252 (+)
Gene ID: HRGMv2_2980_5_84
Type: CAZyme
Location: 88276 - 89826 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2980_5_77 vegetarian > omnivore 1.09291 0.04485

🧭 Explore Read Mapping of CGC

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