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Cluster: HRGMv2_2966_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2966_31 HRGMv2_2966_31_4 4358 5182 - 3.A.1.3.25
TC HRGMv2_2966_31 HRGMv2_2966_31_5 5166 5876 - 3.A.1.3.20
STP HRGMv2_2966_31 HRGMv2_2966_31_6 6075 6923 - SBP_bac_3
pfam HRGMv2_2966_31 HRGMv2_2966_31_7 7541 9703 + DEAD | Helicase_C | ResIII | RecG_wedge | RecG_dom3_C
CAZyme HRGMv2_2966_31 HRGMv2_2966_31_8 9750 11720 + GH36
CAZyme HRGMv2_2966_31 HRGMv2_2966_31_9 11730 13568 + PL33_1
pfam HRGMv2_2966_31 HRGMv2_2966_31_10 13604 15199 + Carb_kinase | YjeF_N
pfam HRGMv2_2966_31 HRGMv2_2966_31_11 15540 16457 - Resolvase | Recombinase
TC HRGMv2_2966_31 HRGMv2_2966_31_12 16528 17895 - 2.A.22.5.3
Gene ID: HRGMv2_2966_31_4
Type: TC
Location: 4358 - 5182 (-)
Gene ID: HRGMv2_2966_31_5
Type: TC
Location: 5166 - 5876 (-)
Gene ID: HRGMv2_2966_31_6
Type: STP
Location: 6075 - 6923 (-)
Gene ID: HRGMv2_2966_31_7
Type: pfam
Location: 7541 - 9703 (+)
Gene ID: HRGMv2_2966_31_8
Type: CAZyme
Location: 9750 - 11720 (+)
Gene ID: HRGMv2_2966_31_9
Type: CAZyme
Location: 11730 - 13568 (+)
Gene ID: HRGMv2_2966_31_10
Type: pfam
Location: 13604 - 15199 (+)
Gene ID: HRGMv2_2966_31_11
Type: pfam
Location: 15540 - 16457 (-)
Gene ID: HRGMv2_2966_31_12
Type: TC
Location: 16528 - 17895 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
CAG-272
→
Genus
UMGS1696
→
Species
UMGS1696 sp900554225

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2966_31_12 vegan > omnivore 1.96128 0.03783
HRGMv2_2966_31_12 vegetarian > omnivore 1.08308 0.04064

🧭 Explore Read Mapping of CGC

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