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Cluster: HRGMv2_2966_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2966_1 HRGMv2_2966_1_16 15923 17683 + 3.A.2.2.2
TC HRGMv2_2966_1 HRGMv2_2966_1_17 17701 19047 + 3.A.2.2.2
TC HRGMv2_2966_1 HRGMv2_2966_1_18 19060 19746 + 3.A.2.2.2
peptidase HRGMv2_2966_1 HRGMv2_2966_1_19 19889 21232 + I04.UPW
TC HRGMv2_2966_1 HRGMv2_2966_1_20 21853 23223 + 2.A.25.1.3
pfam HRGMv2_2966_1 HRGMv2_2966_1_21 23552 26605 + Amidase_3 | GHL10 | Glucodextran_B
CAZyme HRGMv2_2966_1 HRGMv2_2966_1_22 26714 27997 - GH29
Gene ID: HRGMv2_2966_1_16
Type: TC
Location: 15923 - 17683 (+)
Gene ID: HRGMv2_2966_1_17
Type: TC
Location: 17701 - 19047 (+)
Gene ID: HRGMv2_2966_1_18
Type: TC
Location: 19060 - 19746 (+)
Gene ID: HRGMv2_2966_1_19
Type: peptidase
Location: 19889 - 21232 (+)
Gene ID: HRGMv2_2966_1_20
Type: TC
Location: 21853 - 23223 (+)
Gene ID: HRGMv2_2966_1_21
Type: pfam
Location: 23552 - 26605 (+)
Gene ID: HRGMv2_2966_1_22
Type: CAZyme
Location: 26714 - 27997 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
CAG-272
→
Genus
UMGS1696
→
Species
UMGS1696 sp900554225

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2966_1_20 vegetarian > vegan 1.07433 0.00821

🧭 Explore Read Mapping of CGC

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