Cluster: HRGMv2_2966_CGC15
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2966
- CGC Family ID: CGCFAM_04846
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2966_15 | HRGMv2_2966_15_21 | 25402 | 27342 | - | 3.A.1.135.5 |
| TC | HRGMv2_2966_15 | HRGMv2_2966_15_22 | 27332 | 29095 | - | 3.A.1.135.5 |
| TF | HRGMv2_2966_15 | HRGMv2_2966_15_23 | 29120 | 29620 | - | MarR |
| CAZyme | HRGMv2_2966_15 | HRGMv2_2966_15_24 | 29990 | 31453 | + | GH20 |
| STP | HRGMv2_2966_15 | HRGMv2_2966_15_25 | 31567 | 33234 | + | Sigma70_r2 | Sigma70_r4_2 |
| pfam | HRGMv2_2966_15 | HRGMv2_2966_15_26 | 33370 | 34041 | - | Lyx_isomer |
| CAZyme | HRGMv2_2966_15 | HRGMv2_2966_15_27 | 34140 | 36113 | - | GH151 |
| CAZyme | HRGMv2_2966_15 | HRGMv2_2966_15_28 | 36346 | 37167 | - | CE4 |
| TF | HRGMv2_2966_15 | HRGMv2_2966_15_29 | 37354 | 37797 | - | HTH_3 |
| CAZyme | HRGMv2_2966_15 | HRGMv2_2966_15_30 | 37922 | 38956 | - | GH20 |
| TC | HRGMv2_2966_15 | HRGMv2_2966_15_31 | 38988 | 40406 | - | 2.A.66.1.28 |
Gene ID: HRGMv2_2966_15_21
Type: TC
Location: 25402 - 27342 (-)
Type: TC
Location: 25402 - 27342 (-)
Gene ID: HRGMv2_2966_15_22
Type: TC
Location: 27332 - 29095 (-)
Type: TC
Location: 27332 - 29095 (-)
Gene ID: HRGMv2_2966_15_23
Type: TF
Location: 29120 - 29620 (-)
Type: TF
Location: 29120 - 29620 (-)
Gene ID: HRGMv2_2966_15_24
Type: CAZyme
Location: 29990 - 31453 (+)
Type: CAZyme
Location: 29990 - 31453 (+)
Gene ID: HRGMv2_2966_15_25
Type: STP
Location: 31567 - 33234 (+)
Type: STP
Location: 31567 - 33234 (+)
Gene ID: HRGMv2_2966_15_26
Type: pfam
Location: 33370 - 34041 (-)
Type: pfam
Location: 33370 - 34041 (-)
Gene ID: HRGMv2_2966_15_27
Type: CAZyme
Location: 34140 - 36113 (-)
Type: CAZyme
Location: 34140 - 36113 (-)
Gene ID: HRGMv2_2966_15_28
Type: CAZyme
Location: 36346 - 37167 (-)
Type: CAZyme
Location: 36346 - 37167 (-)
Gene ID: HRGMv2_2966_15_29
Type: TF
Location: 37354 - 37797 (-)
Type: TF
Location: 37354 - 37797 (-)
Gene ID: HRGMv2_2966_15_30
Type: CAZyme
Location: 37922 - 38956 (-)
Type: CAZyme
Location: 37922 - 38956 (-)
Gene ID: HRGMv2_2966_15_31
Type: TC
Location: 38988 - 40406 (-)
Type: TC
Location: 38988 - 40406 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS1696
Species
UMGS1696 sp900554225
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2966_15_23 | vegan > omnivore | 2.93711 | 0.03783 |
| HRGMv2_2966_15_24 | vegan > omnivore | 1.34561 | 0.03783 |
| HRGMv2_2966_15_26 | vegan > omnivore | 1.90454 | 0.03783 |
| HRGMv2_2966_15_31 | vegan > omnivore | 1.41009 | 0.03783 |