Cluster: HRGMv2_2966_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2966
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2966_12 | HRGMv2_2966_12_11 | 11983 | 13113 | + | 9.A.28.1.1 |
| pfam | HRGMv2_2966_12 | HRGMv2_2966_12_12 | 13171 | 13908 | - | ABC2_membrane | ABC2_membrane_3 |
| TC | HRGMv2_2966_12 | HRGMv2_2966_12_13 | 13910 | 14644 | - | 3.A.1.105.1 |
| STP | HRGMv2_2966_12 | HRGMv2_2966_12_14 | 14604 | 15230 | - | TetR_N |
| pfam | HRGMv2_2966_12 | HRGMv2_2966_12_15 | 15656 | 17056 | + | MatE | MatE |
| CAZyme | HRGMv2_2966_12 | HRGMv2_2966_12_16 | 17464 | 19479 | + | GH13_9 |
| pfam | HRGMv2_2966_12 | HRGMv2_2966_12_17 | 19589 | 20797 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2966_12 | HRGMv2_2966_12_18 | 20813 | 21946 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2966_12 | HRGMv2_2966_12_19 | 22074 | 23513 | + | GT5 |
| CAZyme | HRGMv2_2966_12 | HRGMv2_2966_12_20 | 23655 | 26087 | + | GT35 |
| CAZyme | HRGMv2_2966_12 | HRGMv2_2966_12_21 | 26084 | 28021 | + | GH13_39 |
Gene ID: HRGMv2_2966_12_11
Type: TC
Location: 11983 - 13113 (+)
Type: TC
Location: 11983 - 13113 (+)
Gene ID: HRGMv2_2966_12_12
Type: pfam
Location: 13171 - 13908 (-)
Type: pfam
Location: 13171 - 13908 (-)
Gene ID: HRGMv2_2966_12_13
Type: TC
Location: 13910 - 14644 (-)
Type: TC
Location: 13910 - 14644 (-)
Gene ID: HRGMv2_2966_12_14
Type: STP
Location: 14604 - 15230 (-)
Type: STP
Location: 14604 - 15230 (-)
Gene ID: HRGMv2_2966_12_15
Type: pfam
Location: 15656 - 17056 (+)
Type: pfam
Location: 15656 - 17056 (+)
Gene ID: HRGMv2_2966_12_16
Type: CAZyme
Location: 17464 - 19479 (+)
Type: CAZyme
Location: 17464 - 19479 (+)
Gene ID: HRGMv2_2966_12_17
Type: pfam
Location: 19589 - 20797 (+)
Type: pfam
Location: 19589 - 20797 (+)
Gene ID: HRGMv2_2966_12_18
Type: pfam
Location: 20813 - 21946 (+)
Type: pfam
Location: 20813 - 21946 (+)
Gene ID: HRGMv2_2966_12_19
Type: CAZyme
Location: 22074 - 23513 (+)
Type: CAZyme
Location: 22074 - 23513 (+)
Gene ID: HRGMv2_2966_12_20
Type: CAZyme
Location: 23655 - 26087 (+)
Type: CAZyme
Location: 23655 - 26087 (+)
Gene ID: HRGMv2_2966_12_21
Type: CAZyme
Location: 26084 - 28021 (+)
Type: CAZyme
Location: 26084 - 28021 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
UMGS1696
Species
UMGS1696 sp900554225
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.