Cluster: HRGMv2_2957_CGC4
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2957
- CGC Family ID: CGCFAM_00015
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2957_1 | HRGMv2_2957_1_298 | 318366 | 319910 | - | 2.A.66.1.40 |
| CAZyme | HRGMv2_2957_1 | HRGMv2_2957_1_299 | 319925 | 321076 | - | GH105 |
| pfam | HRGMv2_2957_1 | HRGMv2_2957_1_300 | 321073 | 322230 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_2957_1 | HRGMv2_2957_1_301 | 322244 | 323107 | - | GT2 |
| CAZyme | HRGMv2_2957_1 | HRGMv2_2957_1_302 | 323128 | 324096 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_2957_1 | HRGMv2_2957_1_303 | 324093 | 325310 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2957_1 | HRGMv2_2957_1_304 | 325312 | 326439 | - | GT4 |
| pfam | HRGMv2_2957_1 | HRGMv2_2957_1_305 | 326655 | 327563 | - | SIR2_2 |
| NULL(UNKNOWN) | HRGMv2_2957_1 | HRGMv2_2957_1_306 | 327583 | 328011 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2957_1 | HRGMv2_2957_1_307 | 328128 | 328946 | - | GT2 |
| CAZyme | HRGMv2_2957_1 | HRGMv2_2957_1_308 | 328955 | 330025 | - | GT2 |
| pfam | HRGMv2_2957_1 | HRGMv2_2957_1_309 | 330031 | 331185 | - | EpsG |
| CAZyme | HRGMv2_2957_1 | HRGMv2_2957_1_310 | 331188 | 332285 | - | GT4 |
| TC | HRGMv2_2957_1 | HRGMv2_2957_1_311 | 332282 | 332899 | - | 9.B.18.1.1 |
Gene ID: HRGMv2_2957_1_298
Type: TC
Location: 318366 - 319910 (-)
Type: TC
Location: 318366 - 319910 (-)
Gene ID: HRGMv2_2957_1_299
Type: CAZyme
Location: 319925 - 321076 (-)
Type: CAZyme
Location: 319925 - 321076 (-)
Gene ID: HRGMv2_2957_1_300
Type: pfam
Location: 321073 - 322230 (-)
Type: pfam
Location: 321073 - 322230 (-)
Gene ID: HRGMv2_2957_1_301
Type: CAZyme
Location: 322244 - 323107 (-)
Type: CAZyme
Location: 322244 - 323107 (-)
Gene ID: HRGMv2_2957_1_302
Type: CAZyme
Location: 323128 - 324096 (-)
Type: CAZyme
Location: 323128 - 324096 (-)
Gene ID: HRGMv2_2957_1_303
Type:
Location: 324093 - 325310 (-)
Type:
Location: 324093 - 325310 (-)
Gene ID: HRGMv2_2957_1_304
Type: CAZyme
Location: 325312 - 326439 (-)
Type: CAZyme
Location: 325312 - 326439 (-)
Gene ID: HRGMv2_2957_1_305
Type: pfam
Location: 326655 - 327563 (-)
Type: pfam
Location: 326655 - 327563 (-)
Gene ID: HRGMv2_2957_1_306
Type:
Location: 327583 - 328011 (-)
Type:
Location: 327583 - 328011 (-)
Gene ID: HRGMv2_2957_1_307
Type: CAZyme
Location: 328128 - 328946 (-)
Type: CAZyme
Location: 328128 - 328946 (-)
Gene ID: HRGMv2_2957_1_308
Type: CAZyme
Location: 328955 - 330025 (-)
Type: CAZyme
Location: 328955 - 330025 (-)
Gene ID: HRGMv2_2957_1_309
Type: pfam
Location: 330031 - 331185 (-)
Type: pfam
Location: 330031 - 331185 (-)
Gene ID: HRGMv2_2957_1_310
Type: CAZyme
Location: 331188 - 332285 (-)
Type: CAZyme
Location: 331188 - 332285 (-)
Gene ID: HRGMv2_2957_1_311
Type: TC
Location: 332282 - 332899 (-)
Type: TC
Location: 332282 - 332899 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
CAG-390
Species
CAG-390 sp900753295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2957_1_307 | vegetarian > vegan | 1.29211 | 0.02254 |