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Cluster: HRGMv2_2952_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2952_2 HRGMv2_2952_2_54 69570 71081 - GH43_33
CAZyme HRGMv2_2952_2 HRGMv2_2952_2_55 71257 73053 - GH2
TF HRGMv2_2952_2 HRGMv2_2952_2_56 73067 74059 - LacI
TC HRGMv2_2952_2 HRGMv2_2952_2_57 74188 75186 - 3.A.1.1.20
TC HRGMv2_2952_2 HRGMv2_2952_2_58 75233 76180 - 3.A.1.1.11
pfam HRGMv2_2952_2 HRGMv2_2952_2_59 76188 78473 - DUF5696
STP HRGMv2_2952_2 HRGMv2_2952_2_60 78457 80502 - TPR_1
TC HRGMv2_2952_2 HRGMv2_2952_2_61 80516 81385 - 3.A.1.1.36
TC HRGMv2_2952_2 HRGMv2_2952_2_62 81409 82293 - 3.A.1.1.34
STP HRGMv2_2952_2 HRGMv2_2952_2_63 82290 85094 - SBP_bac_1
TC HRGMv2_2952_2 HRGMv2_2952_2_64 85494 86969 - 3.A.1.1.22
Gene ID: HRGMv2_2952_2_54
Type: CAZyme
Location: 69570 - 71081 (-)
Gene ID: HRGMv2_2952_2_55
Type: CAZyme
Location: 71257 - 73053 (-)
Gene ID: HRGMv2_2952_2_56
Type: TF
Location: 73067 - 74059 (-)
Gene ID: HRGMv2_2952_2_57
Type: TC
Location: 74188 - 75186 (-)
Gene ID: HRGMv2_2952_2_58
Type: TC
Location: 75233 - 76180 (-)
Gene ID: HRGMv2_2952_2_59
Type: pfam
Location: 76188 - 78473 (-)
Gene ID: HRGMv2_2952_2_60
Type: STP
Location: 78457 - 80502 (-)
Gene ID: HRGMv2_2952_2_61
Type: TC
Location: 80516 - 81385 (-)
Gene ID: HRGMv2_2952_2_62
Type: TC
Location: 81409 - 82293 (-)
Gene ID: HRGMv2_2952_2_63
Type: STP
Location: 82290 - 85094 (-)
Gene ID: HRGMv2_2952_2_64
Type: TC
Location: 85494 - 86969 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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