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Cluster: HRGMv2_2952_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2952_2 HRGMv2_2952_2_6 7055 8224 - CE2
NULL(UNKNOWN) HRGMv2_2952_2 HRGMv2_2952_2_7 8236 8667 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2952_2 HRGMv2_2952_2_8 8704 10287 - SBP_bac_1
TC HRGMv2_2952_2 HRGMv2_2952_2_9 10486 11373 - 3.A.1.1.39
TC HRGMv2_2952_2 HRGMv2_2952_2_10 11386 12333 - 3.A.1.1.4
STP HRGMv2_2952_2 HRGMv2_2952_2_11 12402 15350 - SBP_bac_1
TC HRGMv2_2952_2 HRGMv2_2952_2_12 15385 16341 - 3.A.1.1.11
TC HRGMv2_2952_2 HRGMv2_2952_2_13 16382 17275 - 3.A.1.1.11
Gene ID: HRGMv2_2952_2_6
Type: CAZyme
Location: 7055 - 8224 (-)
Gene ID: HRGMv2_2952_2_7
Type:
Location: 8236 - 8667 (-)
Gene ID: HRGMv2_2952_2_8
Type: STP
Location: 8704 - 10287 (-)
Gene ID: HRGMv2_2952_2_9
Type: TC
Location: 10486 - 11373 (-)
Gene ID: HRGMv2_2952_2_10
Type: TC
Location: 11386 - 12333 (-)
Gene ID: HRGMv2_2952_2_11
Type: STP
Location: 12402 - 15350 (-)
Gene ID: HRGMv2_2952_2_12
Type: TC
Location: 15385 - 16341 (-)
Gene ID: HRGMv2_2952_2_13
Type: TC
Location: 16382 - 17275 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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