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Cluster: HRGMv2_2952_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2952_15 HRGMv2_2952_15_26 32108 33040 + 3.A.1.1.23
TC HRGMv2_2952_15 HRGMv2_2952_15_27 33088 33948 + 3.A.1.1.39
pfam HRGMv2_2952_15 HRGMv2_2952_15_28 33966 36056 + NHL | Yip1
pfam HRGMv2_2952_15 HRGMv2_2952_15_29 36151 38688 + DUF5696
TC HRGMv2_2952_15 HRGMv2_2952_15_30 38685 39578 + 3.A.1.1.11
TC HRGMv2_2952_15 HRGMv2_2952_15_31 39597 40550 + 3.A.1.1.36
STP HRGMv2_2952_15 HRGMv2_2952_15_32 40570 41970 + SBP_bac_1
NULL(UNKNOWN) HRGMv2_2952_15 HRGMv2_2952_15_33 42000 42992 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2952_15 HRGMv2_2952_15_34 43068 45098 + GH98
TF HRGMv2_2952_15 HRGMv2_2952_15_35 45126 48179 + HTH_AraC | HTH_AraC
TC HRGMv2_2952_15 HRGMv2_2952_15_36 48314 49714 - 2.A.66.1.33
Gene ID: HRGMv2_2952_15_26
Type: TC
Location: 32108 - 33040 (+)
Gene ID: HRGMv2_2952_15_27
Type: TC
Location: 33088 - 33948 (+)
Gene ID: HRGMv2_2952_15_28
Type: pfam
Location: 33966 - 36056 (+)
Gene ID: HRGMv2_2952_15_29
Type: pfam
Location: 36151 - 38688 (+)
Gene ID: HRGMv2_2952_15_30
Type: TC
Location: 38685 - 39578 (+)
Gene ID: HRGMv2_2952_15_31
Type: TC
Location: 39597 - 40550 (+)
Gene ID: HRGMv2_2952_15_32
Type: STP
Location: 40570 - 41970 (+)
Gene ID: HRGMv2_2952_15_33
Type:
Location: 42000 - 42992 (+)
Gene ID: HRGMv2_2952_15_34
Type: CAZyme
Location: 43068 - 45098 (+)
Gene ID: HRGMv2_2952_15_35
Type: TF
Location: 45126 - 48179 (+)
Gene ID: HRGMv2_2952_15_36
Type: TC
Location: 48314 - 49714 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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