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Cluster: HRGMv2_2952_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2952_14 HRGMv2_2952_14_38 41275 42153 - 3.A.1.1.39
TC HRGMv2_2952_14 HRGMv2_2952_14_39 42156 43079 - 3.A.1.1.23
STP HRGMv2_2952_14 HRGMv2_2952_14_40 43093 45852 - SBP_bac_1
TC HRGMv2_2952_14 HRGMv2_2952_14_41 45930 46856 - 3.A.1.1.36
TC HRGMv2_2952_14 HRGMv2_2952_14_42 46878 47834 - 3.A.1.1.20
NULL(UNKNOWN) HRGMv2_2952_14 HRGMv2_2952_14_43 48098 50062 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2952_14 HRGMv2_2952_14_44 50119 51441 - GH16_3
TF HRGMv2_2952_14 HRGMv2_2952_14_45 51687 53114 + HTH_AraC | HTH_AraC
TF HRGMv2_2952_14 HRGMv2_2952_14_46 53095 54468 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2952_14 HRGMv2_2952_14_47 54629 56224 - GH32
CAZyme HRGMv2_2952_14 HRGMv2_2952_14_48 56311 57954 - GH32
Gene ID: HRGMv2_2952_14_38
Type: TC
Location: 41275 - 42153 (-)
Gene ID: HRGMv2_2952_14_39
Type: TC
Location: 42156 - 43079 (-)
Gene ID: HRGMv2_2952_14_40
Type: STP
Location: 43093 - 45852 (-)
Gene ID: HRGMv2_2952_14_41
Type: TC
Location: 45930 - 46856 (-)
Gene ID: HRGMv2_2952_14_42
Type: TC
Location: 46878 - 47834 (-)
Gene ID: HRGMv2_2952_14_43
Type:
Location: 48098 - 50062 (-)
Gene ID: HRGMv2_2952_14_44
Type: CAZyme
Location: 50119 - 51441 (-)
Gene ID: HRGMv2_2952_14_45
Type: TF
Location: 51687 - 53114 (+)
Gene ID: HRGMv2_2952_14_46
Type: TF
Location: 53095 - 54468 (+)
Gene ID: HRGMv2_2952_14_47
Type: CAZyme
Location: 54629 - 56224 (-)
Gene ID: HRGMv2_2952_14_48
Type: CAZyme
Location: 56311 - 57954 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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