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Cluster: HRGMv2_2952_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2952_13 HRGMv2_2952_13_26 28732 29229 - 3.A.11.1.4
TF HRGMv2_2952_13 HRGMv2_2952_13_27 29400 30077 + Trans_reg_C
STP HRGMv2_2952_13 HRGMv2_2952_13_28 30091 31098 + HATPase_c | HisKA
TC HRGMv2_2952_13 HRGMv2_2952_13_29 31221 31904 + 3.A.1.125.3
pfam HRGMv2_2952_13 HRGMv2_2952_13_30 31901 34504 + FtsX | FtsX | MacB_PCD
pfam HRGMv2_2952_13 HRGMv2_2952_13_31 34634 35146 - Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_4
TC HRGMv2_2952_13 HRGMv2_2952_13_32 35368 36963 - 2.A.21.2.1
STP HRGMv2_2952_13 HRGMv2_2952_13_33 36981 38264 - AAA
CAZyme HRGMv2_2952_13 HRGMv2_2952_13_34 38306 39049 - CE1
Gene ID: HRGMv2_2952_13_26
Type: TC
Location: 28732 - 29229 (-)
Gene ID: HRGMv2_2952_13_27
Type: TF
Location: 29400 - 30077 (+)
Gene ID: HRGMv2_2952_13_28
Type: STP
Location: 30091 - 31098 (+)
Gene ID: HRGMv2_2952_13_29
Type: TC
Location: 31221 - 31904 (+)
Gene ID: HRGMv2_2952_13_30
Type: pfam
Location: 31901 - 34504 (+)
Gene ID: HRGMv2_2952_13_31
Type: pfam
Location: 34634 - 35146 (-)
Gene ID: HRGMv2_2952_13_32
Type: TC
Location: 35368 - 36963 (-)
Gene ID: HRGMv2_2952_13_33
Type: STP
Location: 36981 - 38264 (-)
Gene ID: HRGMv2_2952_13_34
Type: CAZyme
Location: 38306 - 39049 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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