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Cluster: HRGMv2_2952_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2952_4 HRGMv2_2952_4_44 61291 62193 + 3.A.1.1.4
TC HRGMv2_2952_4 HRGMv2_2952_4_45 62205 63092 + 3.A.1.1.39
pfam HRGMv2_2952_4 HRGMv2_2952_4_46 63234 65366 + Yip1
pfam HRGMv2_2952_4 HRGMv2_2952_4_47 65420 67693 + DUF5696
TC HRGMv2_2952_4 HRGMv2_2952_4_48 67690 68583 + 3.A.1.1.20
TC HRGMv2_2952_4 HRGMv2_2952_4_49 68580 69530 + 3.A.1.1.11
pfam HRGMv2_2952_4 HRGMv2_2952_4_50 69574 70473 + IU_nuc_hydro
pfam HRGMv2_2952_4 HRGMv2_2952_4_51 70513 71448 + DHDPS
CAZyme HRGMv2_2952_4 HRGMv2_2952_4_52 71470 72801 + GH33
pfam HRGMv2_2952_4 HRGMv2_2952_4_53 72817 74067 + BNR_2
CAZyme HRGMv2_2952_4 HRGMv2_2952_4_54 74118 74873 + CBM66
Gene ID: HRGMv2_2952_4_44
Type: TC
Location: 61291 - 62193 (+)
Gene ID: HRGMv2_2952_4_45
Type: TC
Location: 62205 - 63092 (+)
Gene ID: HRGMv2_2952_4_46
Type: pfam
Location: 63234 - 65366 (+)
Gene ID: HRGMv2_2952_4_47
Type: pfam
Location: 65420 - 67693 (+)
Gene ID: HRGMv2_2952_4_48
Type: TC
Location: 67690 - 68583 (+)
Gene ID: HRGMv2_2952_4_49
Type: TC
Location: 68580 - 69530 (+)
Gene ID: HRGMv2_2952_4_50
Type: pfam
Location: 69574 - 70473 (+)
Gene ID: HRGMv2_2952_4_51
Type: pfam
Location: 70513 - 71448 (+)
Gene ID: HRGMv2_2952_4_52
Type: CAZyme
Location: 71470 - 72801 (+)
Gene ID: HRGMv2_2952_4_53
Type: pfam
Location: 72817 - 74067 (+)
Gene ID: HRGMv2_2952_4_54
Type: CAZyme
Location: 74118 - 74873 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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