dbCAN HGM

Cluster: HRGMv2_2950_CGC40

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_2950_68	HRGMv2_2950_68_3	3560	4687	-	GH179
pfam	HRGMv2_2950_68	HRGMv2_2950_68_4	4780	5667	-	AP_endonuc_2
pfam	HRGMv2_2950_68	HRGMv2_2950_68_5	5687	6808	-	GFO_IDH_MocA \| GFO_IDH_MocA_C \| GFO_IDH_MocA_C3
CAZyme	HRGMv2_2950_68	HRGMv2_2950_68_6	6844	7941	-	GH179
TC	HRGMv2_2950_68	HRGMv2_2950_68_7	8003	8824	-	3.A.1.1.34
TC	HRGMv2_2950_68	HRGMv2_2950_68_8	8825	9745	-	3.A.1.1.37
STP	HRGMv2_2950_68	HRGMv2_2950_68_9	9845	11122	-	SBP_bac_1
TF	HRGMv2_2950_68	HRGMv2_2950_68_10	11337	12908	-	HTH_AraC \| HTH_AraC
TC	HRGMv2_2950_68	HRGMv2_2950_68_11	12901	14673	-	8.A.59.2.1

Gene ID: HRGMv2_2950_68_3
Type: CAZyme
Location: 3560 - 4687 (-)

Gene ID: HRGMv2_2950_68_4
Type: pfam
Location: 4780 - 5667 (-)

Gene ID: HRGMv2_2950_68_5
Type: pfam
Location: 5687 - 6808 (-)

Gene ID: HRGMv2_2950_68_6
Type: CAZyme
Location: 6844 - 7941 (-)

Gene ID: HRGMv2_2950_68_7
Type: TC
Location: 8003 - 8824 (-)

Gene ID: HRGMv2_2950_68_8
Type: TC
Location: 8825 - 9745 (-)

Gene ID: HRGMv2_2950_68_9
Type: STP
Location: 9845 - 11122 (-)

Gene ID: HRGMv2_2950_68_10
Type: TF
Location: 11337 - 12908 (-)

Gene ID: HRGMv2_2950_68_11
Type: TC
Location: 12901 - 14673 (-)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2950_68_3	vegetarian > vegan	2.64271	0.01743
HRGMv2_2950_68_4	vegetarian > vegan	3.68345	0.01743
HRGMv2_2950_68_5	vegetarian > vegan	2.49810	0.01743
HRGMv2_2950_68_6	vegetarian > vegan	1.80623	0.01743
HRGMv2_2950_68_11	vegetarian > vegan	2.00186	0.01743

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2950_68_3	nonIBD > CD	1.05288	0.04977