Cluster: HRGMv2_2950_CGC33
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2950
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2950_54 | HRGMv2_2950_54_79 | 85942 | 86709 | - | 3.A.1.3.24 |
| TC | HRGMv2_2950_54 | HRGMv2_2950_54_80 | 86723 | 87382 | - | 3.A.1.3.12 |
| TC | HRGMv2_2950_54 | HRGMv2_2950_54_81 | 87626 | 88561 | - | 3.A.1.3.16 |
| pfam | HRGMv2_2950_54 | HRGMv2_2950_54_82 | 88783 | 89925 | + | AI-2E_transport |
| TF | HRGMv2_2950_54 | HRGMv2_2950_54_83 | 90071 | 90445 | + | GntR |
| TC | HRGMv2_2950_54 | HRGMv2_2950_54_84 | 90442 | 91341 | + | 3.A.1.128.2 |
| NULL(UNKNOWN) | HRGMv2_2950_54 | HRGMv2_2950_54_85 | 91316 | 93178 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2950_54 | HRGMv2_2950_54_86 | 93325 | 94074 | - | 3.A.1.103.5 |
| pfam | HRGMv2_2950_54 | HRGMv2_2950_54_87 | 94091 | 94876 | - | ABC2_membrane |
| CAZyme | HRGMv2_2950_54 | HRGMv2_2950_54_88 | 94893 | 95780 | - | GT111 |
| NULL(UNKNOWN) | HRGMv2_2950_54 | HRGMv2_2950_54_89 | 96057 | 96470 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2950_54 | HRGMv2_2950_54_90 | 96920 | 97900 | + | LacI |
| CAZyme | HRGMv2_2950_54 | HRGMv2_2950_54_91 | 98183 | 100066 | + | GH13_4 |
Gene ID: HRGMv2_2950_54_79
Type: TC
Location: 85942 - 86709 (-)
Type: TC
Location: 85942 - 86709 (-)
Gene ID: HRGMv2_2950_54_80
Type: TC
Location: 86723 - 87382 (-)
Type: TC
Location: 86723 - 87382 (-)
Gene ID: HRGMv2_2950_54_81
Type: TC
Location: 87626 - 88561 (-)
Type: TC
Location: 87626 - 88561 (-)
Gene ID: HRGMv2_2950_54_82
Type: pfam
Location: 88783 - 89925 (+)
Type: pfam
Location: 88783 - 89925 (+)
Gene ID: HRGMv2_2950_54_83
Type: TF
Location: 90071 - 90445 (+)
Type: TF
Location: 90071 - 90445 (+)
Gene ID: HRGMv2_2950_54_84
Type: TC
Location: 90442 - 91341 (+)
Type: TC
Location: 90442 - 91341 (+)
Gene ID: HRGMv2_2950_54_85
Type:
Location: 91316 - 93178 (+)
Type:
Location: 91316 - 93178 (+)
Gene ID: HRGMv2_2950_54_86
Type: TC
Location: 93325 - 94074 (-)
Type: TC
Location: 93325 - 94074 (-)
Gene ID: HRGMv2_2950_54_87
Type: pfam
Location: 94091 - 94876 (-)
Type: pfam
Location: 94091 - 94876 (-)
Gene ID: HRGMv2_2950_54_88
Type: CAZyme
Location: 94893 - 95780 (-)
Type: CAZyme
Location: 94893 - 95780 (-)
Gene ID: HRGMv2_2950_54_89
Type:
Location: 96057 - 96470 (-)
Type:
Location: 96057 - 96470 (-)
Gene ID: HRGMv2_2950_54_90
Type: TF
Location: 96920 - 97900 (+)
Type: TF
Location: 96920 - 97900 (+)
Gene ID: HRGMv2_2950_54_91
Type: CAZyme
Location: 98183 - 100066 (+)
Type: CAZyme
Location: 98183 - 100066 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caccousia
Species
Caccousia sp900752115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.