Cluster: HRGMv2_2950_CGC28
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2950
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2950_46 | HRGMv2_2950_46_15 | 15403 | 17388 | - | GH120 |
| pfam | HRGMv2_2950_46 | HRGMv2_2950_46_16 | 17528 | 18364 | - | Hydrolase | AP_endonuc_2 | Hydrolase_like | HAD_2 |
| NULL(UNKNOWN) | HRGMv2_2950_46 | HRGMv2_2950_46_17 | 18319 | 19125 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2950_46 | HRGMv2_2950_46_18 | 19129 | 20247 | - | GH105 |
| TF | HRGMv2_2950_46 | HRGMv2_2950_46_19 | 20365 | 21003 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2950_46 | HRGMv2_2950_46_20 | 21117 | 23306 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_2950_46 | HRGMv2_2950_46_21 | 23191 | 23733 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2950_46 | HRGMv2_2950_46_22 | 23755 | 24261 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2950_46 | HRGMv2_2950_46_23 | 24874 | 26166 | + | GH27 |
| CAZyme | HRGMv2_2950_46 | HRGMv2_2950_46_24 | 26234 | 28150 | + | GH127 |
| TC | HRGMv2_2950_46 | HRGMv2_2950_46_25 | 28173 | 29942 | - | 3.A.1.135.5 |
| TC | HRGMv2_2950_46 | HRGMv2_2950_46_26 | 30027 | 31784 | - | 3.A.1.135.7 |
| TF | HRGMv2_2950_46 | HRGMv2_2950_46_27 | 31801 | 32298 | - | MarR |
| CAZyme | HRGMv2_2950_46 | HRGMv2_2950_46_28 | 32446 | 33558 | - | GH179 |
| CAZyme | HRGMv2_2950_46 | HRGMv2_2950_46_29 | 33907 | 35220 | + | GH3 |
Gene ID: HRGMv2_2950_46_15
Type: CAZyme
Location: 15403 - 17388 (-)
Type: CAZyme
Location: 15403 - 17388 (-)
Gene ID: HRGMv2_2950_46_16
Type: pfam
Location: 17528 - 18364 (-)
Type: pfam
Location: 17528 - 18364 (-)
Gene ID: HRGMv2_2950_46_17
Type:
Location: 18319 - 19125 (-)
Type:
Location: 18319 - 19125 (-)
Gene ID: HRGMv2_2950_46_18
Type: CAZyme
Location: 19129 - 20247 (-)
Type: CAZyme
Location: 19129 - 20247 (-)
Gene ID: HRGMv2_2950_46_19
Type: TF
Location: 20365 - 21003 (+)
Type: TF
Location: 20365 - 21003 (+)
Gene ID: HRGMv2_2950_46_20
Type: CAZyme
Location: 21117 - 23306 (+)
Type: CAZyme
Location: 21117 - 23306 (+)
Gene ID: HRGMv2_2950_46_21
Type:
Location: 23191 - 23733 (-)
Type:
Location: 23191 - 23733 (-)
Gene ID: HRGMv2_2950_46_22
Type:
Location: 23755 - 24261 (-)
Type:
Location: 23755 - 24261 (-)
Gene ID: HRGMv2_2950_46_23
Type: CAZyme
Location: 24874 - 26166 (+)
Type: CAZyme
Location: 24874 - 26166 (+)
Gene ID: HRGMv2_2950_46_24
Type: CAZyme
Location: 26234 - 28150 (+)
Type: CAZyme
Location: 26234 - 28150 (+)
Gene ID: HRGMv2_2950_46_25
Type: TC
Location: 28173 - 29942 (-)
Type: TC
Location: 28173 - 29942 (-)
Gene ID: HRGMv2_2950_46_26
Type: TC
Location: 30027 - 31784 (-)
Type: TC
Location: 30027 - 31784 (-)
Gene ID: HRGMv2_2950_46_27
Type: TF
Location: 31801 - 32298 (-)
Type: TF
Location: 31801 - 32298 (-)
Gene ID: HRGMv2_2950_46_28
Type: CAZyme
Location: 32446 - 33558 (-)
Type: CAZyme
Location: 32446 - 33558 (-)
Gene ID: HRGMv2_2950_46_29
Type: CAZyme
Location: 33907 - 35220 (+)
Type: CAZyme
Location: 33907 - 35220 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Caccousia
Species
Caccousia sp900752115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.