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Cluster: HRGMv2_2950_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2950_39 HRGMv2_2950_39_29 21184 22662 - GH51_1
CAZyme HRGMv2_2950_39 HRGMv2_2950_39_30 22705 24819 - GH3
CAZyme HRGMv2_2950_39 HRGMv2_2950_39_31 24855 26276 - GH43_35
CAZyme HRGMv2_2950_39 HRGMv2_2950_39_32 26290 27792 - GH39
CAZyme HRGMv2_2950_39 HRGMv2_2950_39_33 27789 28616 - CE1
peptidase HRGMv2_2950_39 HRGMv2_2950_39_34 28667 30166 - S09.UPW
CAZyme HRGMv2_2950_39 HRGMv2_2950_39_35 30221 32038 - GH43_27
CAZyme HRGMv2_2950_39 HRGMv2_2950_39_36 32118 35108 - GH10
STP HRGMv2_2950_39 HRGMv2_2950_39_37 35282 37060 - SBP_bac_1
TC HRGMv2_2950_39 HRGMv2_2950_39_38 37160 38089 - 3.A.1.1.29
TC HRGMv2_2950_39 HRGMv2_2950_39_39 38115 39041 - 3.A.1.1.29
TF HRGMv2_2950_39 HRGMv2_2950_39_40 39383 40438 - LacI
pfam HRGMv2_2950_39 HRGMv2_2950_39_41 40660 41493 - SpoU_methylase | MRM3-like_sub_bind | SpoU_sub_bind_like
TC HRGMv2_2950_39 HRGMv2_2950_39_42 42402 43160 + 3.A.1.23.8
pfam HRGMv2_2950_39 HRGMv2_2950_39_43 43162 43491 + CbiN
pfam HRGMv2_2950_39 HRGMv2_2950_39_44 43488 44261 + CbiQ
TC HRGMv2_2950_39 HRGMv2_2950_39_45 44258 45136 + 3.A.1.23.8
Gene ID: HRGMv2_2950_39_29
Type: CAZyme
Location: 21184 - 22662 (-)
Gene ID: HRGMv2_2950_39_30
Type: CAZyme
Location: 22705 - 24819 (-)
Gene ID: HRGMv2_2950_39_31
Type: CAZyme
Location: 24855 - 26276 (-)
Gene ID: HRGMv2_2950_39_32
Type: CAZyme
Location: 26290 - 27792 (-)
Gene ID: HRGMv2_2950_39_33
Type: CAZyme
Location: 27789 - 28616 (-)
Gene ID: HRGMv2_2950_39_34
Type: peptidase
Location: 28667 - 30166 (-)
Gene ID: HRGMv2_2950_39_35
Type: CAZyme
Location: 30221 - 32038 (-)
Gene ID: HRGMv2_2950_39_36
Type: CAZyme
Location: 32118 - 35108 (-)
Gene ID: HRGMv2_2950_39_37
Type: STP
Location: 35282 - 37060 (-)
Gene ID: HRGMv2_2950_39_38
Type: TC
Location: 37160 - 38089 (-)
Gene ID: HRGMv2_2950_39_39
Type: TC
Location: 38115 - 39041 (-)
Gene ID: HRGMv2_2950_39_40
Type: TF
Location: 39383 - 40438 (-)
Gene ID: HRGMv2_2950_39_41
Type: pfam
Location: 40660 - 41493 (-)
Gene ID: HRGMv2_2950_39_42
Type: TC
Location: 42402 - 43160 (+)
Gene ID: HRGMv2_2950_39_43
Type: pfam
Location: 43162 - 43491 (+)
Gene ID: HRGMv2_2950_39_44
Type: pfam
Location: 43488 - 44261 (+)
Gene ID: HRGMv2_2950_39_45
Type: TC
Location: 44258 - 45136 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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