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Cluster: HRGMv2_2950_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2950_33 HRGMv2_2950_33_15 17703 19571 + GH20
pfam HRGMv2_2950_33 HRGMv2_2950_33_16 19573 19875 + DNA_binding_1
NULL(UNKNOWN) HRGMv2_2950_33 HRGMv2_2950_33_17 20136 20774 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2950_33 HRGMv2_2950_33_18 21001 22746 + 8.A.59.2.1
TF HRGMv2_2950_33 HRGMv2_2950_33_19 22743 24293 + HTH_AraC | HTH_AraC
STP HRGMv2_2950_33 HRGMv2_2950_33_20 24598 25956 + SBP_bac_1
TC HRGMv2_2950_33 HRGMv2_2950_33_21 26039 26959 + 3.A.1.1.28
TC HRGMv2_2950_33 HRGMv2_2950_33_22 26996 27808 + 3.A.1.1.34
CAZyme HRGMv2_2950_33 HRGMv2_2950_33_23 27832 28881 + GH179
Gene ID: HRGMv2_2950_33_15
Type: CAZyme
Location: 17703 - 19571 (+)
Gene ID: HRGMv2_2950_33_16
Type: pfam
Location: 19573 - 19875 (+)
Gene ID: HRGMv2_2950_33_17
Type:
Location: 20136 - 20774 (-)
Gene ID: HRGMv2_2950_33_18
Type: TC
Location: 21001 - 22746 (+)
Gene ID: HRGMv2_2950_33_19
Type: TF
Location: 22743 - 24293 (+)
Gene ID: HRGMv2_2950_33_20
Type: STP
Location: 24598 - 25956 (+)
Gene ID: HRGMv2_2950_33_21
Type: TC
Location: 26039 - 26959 (+)
Gene ID: HRGMv2_2950_33_22
Type: TC
Location: 26996 - 27808 (+)
Gene ID: HRGMv2_2950_33_23
Type: CAZyme
Location: 27832 - 28881 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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