Cluster: HRGMv2_2949_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2949
- CGC Family ID: CGCFAM_06192
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2949_5 | HRGMv2_2949_5_93 | 106312 | 107430 | + | 3.A.1.11.8 |
| TC | HRGMv2_2949_5 | HRGMv2_2949_5_94 | 107427 | 108305 | + | 3.A.1.11.2 |
| TC | HRGMv2_2949_5 | HRGMv2_2949_5_95 | 108321 | 109163 | + | 3.A.1.11.2 |
| TC | HRGMv2_2949_5 | HRGMv2_2949_5_96 | 109180 | 110286 | + | 3.A.1.11.7 |
| STP | HRGMv2_2949_5 | HRGMv2_2949_5_97 | 110668 | 112053 | + | PALP |
| CAZyme | HRGMv2_2949_5 | HRGMv2_2949_5_98 | 112181 | 113368 | - | GT1 |
| TF | HRGMv2_2949_5 | HRGMv2_2949_5_99 | 113368 | 113592 | - | SpoVT_AbrB |
| TC | HRGMv2_2949_5 | HRGMv2_2949_5_100 | 113721 | 114734 | + | 9.A.11.1.1 |
| TC | HRGMv2_2949_5 | HRGMv2_2949_5_101 | 114737 | 115108 | + | 9.A.11.1.1 |
| pfam | HRGMv2_2949_5 | HRGMv2_2949_5_102 | 115253 | 115690 | - | HSP20 |
| pfam | HRGMv2_2949_5 | HRGMv2_2949_5_103 | 115872 | 116516 | - | PseudoU_synth_2 |
| TC | HRGMv2_2949_5 | HRGMv2_2949_5_104 | 116708 | 118471 | + | 2.A.58.2.2 |
Gene ID: HRGMv2_2949_5_93
Type: TC
Location: 106312 - 107430 (+)
Type: TC
Location: 106312 - 107430 (+)
Gene ID: HRGMv2_2949_5_94
Type: TC
Location: 107427 - 108305 (+)
Type: TC
Location: 107427 - 108305 (+)
Gene ID: HRGMv2_2949_5_95
Type: TC
Location: 108321 - 109163 (+)
Type: TC
Location: 108321 - 109163 (+)
Gene ID: HRGMv2_2949_5_96
Type: TC
Location: 109180 - 110286 (+)
Type: TC
Location: 109180 - 110286 (+)
Gene ID: HRGMv2_2949_5_97
Type: STP
Location: 110668 - 112053 (+)
Type: STP
Location: 110668 - 112053 (+)
Gene ID: HRGMv2_2949_5_98
Type: CAZyme
Location: 112181 - 113368 (-)
Type: CAZyme
Location: 112181 - 113368 (-)
Gene ID: HRGMv2_2949_5_99
Type: TF
Location: 113368 - 113592 (-)
Type: TF
Location: 113368 - 113592 (-)
Gene ID: HRGMv2_2949_5_100
Type: TC
Location: 113721 - 114734 (+)
Type: TC
Location: 113721 - 114734 (+)
Gene ID: HRGMv2_2949_5_101
Type: TC
Location: 114737 - 115108 (+)
Type: TC
Location: 114737 - 115108 (+)
Gene ID: HRGMv2_2949_5_102
Type: pfam
Location: 115253 - 115690 (-)
Type: pfam
Location: 115253 - 115690 (-)
Gene ID: HRGMv2_2949_5_103
Type: pfam
Location: 115872 - 116516 (-)
Type: pfam
Location: 115872 - 116516 (-)
Gene ID: HRGMv2_2949_5_104
Type: TC
Location: 116708 - 118471 (+)
Type: TC
Location: 116708 - 118471 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2949_5_94 | vegetarian > omnivore | 2.03675 | 0.00286 |
| HRGMv2_2949_5_94 | vegetarian > vegan | 1.12937 | 0.00863 |
| HRGMv2_2949_5_95 | vegetarian > omnivore | 1.53039 | 0.00286 |
| HRGMv2_2949_5_96 | vegetarian > omnivore | 1.61704 | 0.00286 |
| HRGMv2_2949_5_96 | vegetarian > vegan | 1.01183 | 0.00863 |