Cluster: HRGMv2_2949_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2949
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2949_3 | HRGMv2_2949_3_47 | 58431 | 60065 | - | 3.A.7.14.2 |
| NULL(UNKNOWN) | HRGMv2_2949_3 | HRGMv2_2949_3_48 | 60090 | 60371 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2949_3 | HRGMv2_2949_3_49 | 60529 | 62868 | - | GT51 |
Gene ID: HRGMv2_2949_3_47
Type: TC
Location: 58431 - 60065 (-)
Type: TC
Location: 58431 - 60065 (-)
Gene ID: HRGMv2_2949_3_48
Type:
Location: 60090 - 60371 (-)
Type:
Location: 60090 - 60371 (-)
Gene ID: HRGMv2_2949_3_49
Type: CAZyme
Location: 60529 - 62868 (-)
Type: CAZyme
Location: 60529 - 62868 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2949_3_48 | vegetarian > omnivore | 3.21314 | 0.00286 |
| HRGMv2_2949_3_48 | vegetarian > vegan | 3.07630 | 0.00863 |