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Cluster: HRGMv2_2949_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2949_3 HRGMv2_2949_3_34 40032 40877 - 3.A.1.149.1
TF HRGMv2_2949_3 HRGMv2_2949_3_35 40874 41248 - GntR
pfam HRGMv2_2949_3 HRGMv2_2949_3_36 41585 42442 + SAM_HAT_N | SAM_HAT_C
TC HRGMv2_2949_3 HRGMv2_2949_3_37 42503 43054 + 3.A.1.29.1
TC HRGMv2_2949_3 HRGMv2_2949_3_38 43190 44896 + 3.A.1.29.1
TC HRGMv2_2949_3 HRGMv2_2949_3_39 44893 45720 + 3.A.1.29.1
sulfatase HRGMv2_2949_3 HRGMv2_2949_3_40 45738 46922 + S1_2
CAZyme HRGMv2_2949_3 HRGMv2_2949_3_41 47053 49383 + GH2
CAZyme HRGMv2_2949_3 HRGMv2_2949_3_42 49380 50954 + GH36
Gene ID: HRGMv2_2949_3_34
Type: TC
Location: 40032 - 40877 (-)
Gene ID: HRGMv2_2949_3_35
Type: TF
Location: 40874 - 41248 (-)
Gene ID: HRGMv2_2949_3_36
Type: pfam
Location: 41585 - 42442 (+)
Gene ID: HRGMv2_2949_3_37
Type: TC
Location: 42503 - 43054 (+)
Gene ID: HRGMv2_2949_3_38
Type: TC
Location: 43190 - 44896 (+)
Gene ID: HRGMv2_2949_3_39
Type: TC
Location: 44893 - 45720 (+)
Gene ID: HRGMv2_2949_3_40
Type: sulfatase
Location: 45738 - 46922 (+)
Gene ID: HRGMv2_2949_3_41
Type: CAZyme
Location: 47053 - 49383 (+)
Gene ID: HRGMv2_2949_3_42
Type: CAZyme
Location: 49380 - 50954 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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