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Cluster: HRGMv2_2949_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2949_20 HRGMv2_2949_20_19 14635 15375 - 3.A.1.3.25
TC HRGMv2_2949_20 HRGMv2_2949_20_20 15386 16516 - 3.A.1.3.20
TC HRGMv2_2949_20 HRGMv2_2949_20_21 16578 17459 - 3.A.1.3.20
TC HRGMv2_2949_20 HRGMv2_2949_20_22 17996 19324 + 2.A.38.4.1
TC HRGMv2_2949_20 HRGMv2_2949_20_23 19495 20142 + 2.A.38.4.3
CAZyme HRGMv2_2949_20 HRGMv2_2949_20_24 20212 22590 - GH13_39
CAZyme HRGMv2_2949_20 HRGMv2_2949_20_25 22578 24056 - GT5
CAZyme HRGMv2_2949_20 HRGMv2_2949_20_26 24101 26215 - GH13_9
NULL(UNKNOWN) HRGMv2_2949_20 HRGMv2_2949_20_27 26451 28826 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_2949_20 HRGMv2_2949_20_28 29434 32811 - C110.UPW
TC HRGMv2_2949_20 HRGMv2_2949_20_29 33457 35448 + 3.A.10.1.5
Gene ID: HRGMv2_2949_20_19
Type: TC
Location: 14635 - 15375 (-)
Gene ID: HRGMv2_2949_20_20
Type: TC
Location: 15386 - 16516 (-)
Gene ID: HRGMv2_2949_20_21
Type: TC
Location: 16578 - 17459 (-)
Gene ID: HRGMv2_2949_20_22
Type: TC
Location: 17996 - 19324 (+)
Gene ID: HRGMv2_2949_20_23
Type: TC
Location: 19495 - 20142 (+)
Gene ID: HRGMv2_2949_20_24
Type: CAZyme
Location: 20212 - 22590 (-)
Gene ID: HRGMv2_2949_20_25
Type: CAZyme
Location: 22578 - 24056 (-)
Gene ID: HRGMv2_2949_20_26
Type: CAZyme
Location: 24101 - 26215 (-)
Gene ID: HRGMv2_2949_20_27
Type:
Location: 26451 - 28826 (-)
Gene ID: HRGMv2_2949_20_28
Type: peptidase
Location: 29434 - 32811 (-)
Gene ID: HRGMv2_2949_20_29
Type: TC
Location: 33457 - 35448 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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