Cluster: HRGMv2_2949_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2949
- CGC Family ID: CGCFAM_00559
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2949_14 | HRGMv2_2949_14_50 | 51297 | 52340 | - | GT2 |
| pfam | HRGMv2_2949_14 | HRGMv2_2949_14_51 | 52356 | 53030 | - | DUF2461 |
| TC | HRGMv2_2949_14 | HRGMv2_2949_14_52 | 53213 | 54577 | + | 2.A.38.1.1 |
| TC | HRGMv2_2949_14 | HRGMv2_2949_14_53 | 54574 | 56010 | + | 2.A.38.1.1 |
| TC | HRGMv2_2949_14 | HRGMv2_2949_14_54 | 56061 | 57497 | + | 2.A.38.1.1 |
Gene ID: HRGMv2_2949_14_50
Type: CAZyme
Location: 51297 - 52340 (-)
Type: CAZyme
Location: 51297 - 52340 (-)
Gene ID: HRGMv2_2949_14_51
Type: pfam
Location: 52356 - 53030 (-)
Type: pfam
Location: 52356 - 53030 (-)
Gene ID: HRGMv2_2949_14_52
Type: TC
Location: 53213 - 54577 (+)
Type: TC
Location: 53213 - 54577 (+)
Gene ID: HRGMv2_2949_14_53
Type: TC
Location: 54574 - 56010 (+)
Type: TC
Location: 54574 - 56010 (+)
Gene ID: HRGMv2_2949_14_54
Type: TC
Location: 56061 - 57497 (+)
Type: TC
Location: 56061 - 57497 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.