Cluster: HRGMv2_2949_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2949
- CGC Family ID: CGCFAM_00092
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2949_13 | HRGMv2_2949_13_2 | 951 | 3530 | + | 3.A.9.1.2 |
| pfam | HRGMv2_2949_13 | HRGMv2_2949_13_3 | 3899 | 4651 | + | HGSNAT_cat |
| TF | HRGMv2_2949_13 | HRGMv2_2949_13_4 | 4710 | 4946 | - | HTH_3 |
| CAZyme | HRGMv2_2949_13 | HRGMv2_2949_13_5 | 5026 | 7191 | - | GH112 |
| pfam | HRGMv2_2949_13 | HRGMv2_2949_13_6 | 7212 | 7403 | - | DUF6903 |
| TC | HRGMv2_2949_13 | HRGMv2_2949_13_7 | 7413 | 8294 | - | 3.A.1.1.25 |
| TC | HRGMv2_2949_13 | HRGMv2_2949_13_8 | 8307 | 9191 | - | 3.A.1.1.45 |
Gene ID: HRGMv2_2949_13_2
Type: TC
Location: 951 - 3530 (+)
Type: TC
Location: 951 - 3530 (+)
Gene ID: HRGMv2_2949_13_3
Type: pfam
Location: 3899 - 4651 (+)
Type: pfam
Location: 3899 - 4651 (+)
Gene ID: HRGMv2_2949_13_4
Type: TF
Location: 4710 - 4946 (-)
Type: TF
Location: 4710 - 4946 (-)
Gene ID: HRGMv2_2949_13_5
Type: CAZyme
Location: 5026 - 7191 (-)
Type: CAZyme
Location: 5026 - 7191 (-)
Gene ID: HRGMv2_2949_13_6
Type: pfam
Location: 7212 - 7403 (-)
Type: pfam
Location: 7212 - 7403 (-)
Gene ID: HRGMv2_2949_13_7
Type: TC
Location: 7413 - 8294 (-)
Type: TC
Location: 7413 - 8294 (-)
Gene ID: HRGMv2_2949_13_8
Type: TC
Location: 8307 - 9191 (-)
Type: TC
Location: 8307 - 9191 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.