Cluster: HRGMv2_2949_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: beta-glucan
- Genome ID: HRGMv2_2949
- CGC Family ID: CGCFAM_01480
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2949_12 | HRGMv2_2949_12_40 | 44049 | 45542 | + | 3.A.1.2.20 |
| TC | HRGMv2_2949_12 | HRGMv2_2949_12_41 | 45581 | 46582 | + | 3.A.1.2.15 |
| CAZyme | HRGMv2_2949_12 | HRGMv2_2949_12_42 | 46602 | 47645 | + | GH179 |
| pfam | HRGMv2_2949_12 | HRGMv2_2949_12_43 | 47664 | 48587 | + | AP_endonuc_2 |
| pfam | HRGMv2_2949_12 | HRGMv2_2949_12_44 | 48600 | 49415 | + | AP_endonuc_2 |
| CAZyme | HRGMv2_2949_12 | HRGMv2_2949_12_45 | 49426 | 50412 | + | GH179 |
Gene ID: HRGMv2_2949_12_40
Type: TC
Location: 44049 - 45542 (+)
Type: TC
Location: 44049 - 45542 (+)
Gene ID: HRGMv2_2949_12_41
Type: TC
Location: 45581 - 46582 (+)
Type: TC
Location: 45581 - 46582 (+)
Gene ID: HRGMv2_2949_12_42
Type: CAZyme
Location: 46602 - 47645 (+)
Type: CAZyme
Location: 46602 - 47645 (+)
Gene ID: HRGMv2_2949_12_43
Type: pfam
Location: 47664 - 48587 (+)
Type: pfam
Location: 47664 - 48587 (+)
Gene ID: HRGMv2_2949_12_44
Type: pfam
Location: 48600 - 49415 (+)
Type: pfam
Location: 48600 - 49415 (+)
Gene ID: HRGMv2_2949_12_45
Type: CAZyme
Location: 49426 - 50412 (+)
Type: CAZyme
Location: 49426 - 50412 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.