Cluster: HRGMv2_2949_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2949
- CGC Family ID: CGCFAM_00245
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2949_11 | HRGMv2_2949_11_48 | 55693 | 56649 | + | 3.A.1.34.1 |
| TC | HRGMv2_2949_11 | HRGMv2_2949_11_49 | 56642 | 57439 | + | 3.A.1.34.1 |
| peptidase | HRGMv2_2949_11 | HRGMv2_2949_11_50 | 57524 | 58447 | + | S09.B04 |
| NULL(UNKNOWN) | HRGMv2_2949_11 | HRGMv2_2949_11_51 | 58575 | 59948 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2949_11 | HRGMv2_2949_11_52 | 60272 | 61393 | - | GT2 |
Gene ID: HRGMv2_2949_11_48
Type: TC
Location: 55693 - 56649 (+)
Type: TC
Location: 55693 - 56649 (+)
Gene ID: HRGMv2_2949_11_49
Type: TC
Location: 56642 - 57439 (+)
Type: TC
Location: 56642 - 57439 (+)
Gene ID: HRGMv2_2949_11_50
Type: peptidase
Location: 57524 - 58447 (+)
Type: peptidase
Location: 57524 - 58447 (+)
Gene ID: HRGMv2_2949_11_51
Type:
Location: 58575 - 59948 (-)
Type:
Location: 58575 - 59948 (-)
Gene ID: HRGMv2_2949_11_52
Type: CAZyme
Location: 60272 - 61393 (-)
Type: CAZyme
Location: 60272 - 61393 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2949_11_48 | vegetarian > omnivore | 1.22780 | 0.00286 |