Cluster: HRGMv2_2949_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2949
- CGC Family ID: CGCFAM_06189
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2949_2 | HRGMv2_2949_2_64 | 67066 | 68829 | - | 2.A.58.2.2 |
| CAZyme | HRGMv2_2949_2 | HRGMv2_2949_2_65 | 69029 | 70315 | + | GH13 |
| pfam | HRGMv2_2949_2 | HRGMv2_2949_2_66 | 70367 | 71347 | + | Asn_synthase | GMP_synt_C | NAD_synthase | tRNA_Me_trans |
| TF | HRGMv2_2949_2 | HRGMv2_2949_2_67 | 71538 | 71864 | + | HTH_5 |
| TC | HRGMv2_2949_2 | HRGMv2_2949_2_68 | 71940 | 72941 | + | 2.A.119.1.3 |
Gene ID: HRGMv2_2949_2_64
Type: TC
Location: 67066 - 68829 (-)
Type: TC
Location: 67066 - 68829 (-)
Gene ID: HRGMv2_2949_2_65
Type: CAZyme
Location: 69029 - 70315 (+)
Type: CAZyme
Location: 69029 - 70315 (+)
Gene ID: HRGMv2_2949_2_66
Type: pfam
Location: 70367 - 71347 (+)
Type: pfam
Location: 70367 - 71347 (+)
Gene ID: HRGMv2_2949_2_67
Type: TF
Location: 71538 - 71864 (+)
Type: TF
Location: 71538 - 71864 (+)
Gene ID: HRGMv2_2949_2_68
Type: TC
Location: 71940 - 72941 (+)
Type: TC
Location: 71940 - 72941 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp944385705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.