Cluster: HRGMv2_2947_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2947
- CGC Family ID: CGCFAM_10250
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2947_3 | HRGMv2_2947_3_35 | 35192 | 36115 | + | 8.A.21.2.2 |
| CAZyme | HRGMv2_2947_3 | HRGMv2_2947_3_36 | 36184 | 37536 | - | GH29 |
| pfam | HRGMv2_2947_3 | HRGMv2_2947_3_37 | 37559 | 40000 | - | MFS_1 | MFS_2 |
| pfam | HRGMv2_2947_3 | HRGMv2_2947_3_38 | 40157 | 41365 | - | MFS_1 | MFS_1 | MFS_1_like |
| TC | HRGMv2_2947_3 | HRGMv2_2947_3_39 | 41518 | 43035 | - | 2.A.2.3.2 |
Gene ID: HRGMv2_2947_3_35
Type: TC
Location: 35192 - 36115 (+)
Type: TC
Location: 35192 - 36115 (+)
Gene ID: HRGMv2_2947_3_36
Type: CAZyme
Location: 36184 - 37536 (-)
Type: CAZyme
Location: 36184 - 37536 (-)
Gene ID: HRGMv2_2947_3_37
Type: pfam
Location: 37559 - 40000 (-)
Type: pfam
Location: 37559 - 40000 (-)
Gene ID: HRGMv2_2947_3_38
Type: pfam
Location: 40157 - 41365 (-)
Type: pfam
Location: 40157 - 41365 (-)
Gene ID: HRGMv2_2947_3_39
Type: TC
Location: 41518 - 43035 (-)
Type: TC
Location: 41518 - 43035 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.