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Cluster: HRGMv2_2941_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2941_4 HRGMv2_2941_4_62 63216 64109 + 1.A.23.3.1
pfam HRGMv2_2941_4 HRGMv2_2941_4_63 64106 64966 + Flg_new
NULL(UNKNOWN) HRGMv2_2941_4 HRGMv2_2941_4_64 65102 65284 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2941_4 HRGMv2_2941_4_65 65323 67587 - GH13_39
CAZyme HRGMv2_2941_4 HRGMv2_2941_4_66 67575 69053 - GT5
CAZyme HRGMv2_2941_4 HRGMv2_2941_4_67 69037 70959 - CBM48 | GH13_9
STP HRGMv2_2941_4 HRGMv2_2941_4_68 71086 71451 + Glyoxalase
TF HRGMv2_2941_4 HRGMv2_2941_4_69 71582 72019 + MarR
TC HRGMv2_2941_4 HRGMv2_2941_4_70 72012 73313 + 2.A.66.1.7
Gene ID: HRGMv2_2941_4_62
Type: TC
Location: 63216 - 64109 (+)
Gene ID: HRGMv2_2941_4_63
Type: pfam
Location: 64106 - 64966 (+)
Gene ID: HRGMv2_2941_4_64
Type:
Location: 65102 - 65284 (+)
Gene ID: HRGMv2_2941_4_65
Type: CAZyme
Location: 65323 - 67587 (-)
Gene ID: HRGMv2_2941_4_66
Type: CAZyme
Location: 67575 - 69053 (-)
Gene ID: HRGMv2_2941_4_67
Type: CAZyme
Location: 69037 - 70959 (-)
Gene ID: HRGMv2_2941_4_68
Type: STP
Location: 71086 - 71451 (+)
Gene ID: HRGMv2_2941_4_69
Type: TF
Location: 71582 - 72019 (+)
Gene ID: HRGMv2_2941_4_70
Type: TC
Location: 72012 - 73313 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2941_4_68 vegetarian > vegan 1.14475 0.01054

🧭 Explore Read Mapping of CGC

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