Cluster: HRGMv2_2941_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2941
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2941_11 | HRGMv2_2941_11_26 | 20877 | 22241 | - | 2.A.66.1.32 |
| CAZyme | HRGMv2_2941_11 | HRGMv2_2941_11_27 | 22343 | 23659 | + | GT76 |
| pfam | HRGMv2_2941_11 | HRGMv2_2941_11_28 | 23750 | 23989 | + | SecG |
| TC | HRGMv2_2941_11 | HRGMv2_2941_11_29 | 24066 | 24764 | + | 2.A.78.1.1 |
| TC | HRGMv2_2941_11 | HRGMv2_2941_11_30 | 24761 | 25093 | + | 2.A.78.1.1 |
Gene ID: HRGMv2_2941_11_26
Type: TC
Location: 20877 - 22241 (-)
Type: TC
Location: 20877 - 22241 (-)
Gene ID: HRGMv2_2941_11_27
Type: CAZyme
Location: 22343 - 23659 (+)
Type: CAZyme
Location: 22343 - 23659 (+)
Gene ID: HRGMv2_2941_11_28
Type: pfam
Location: 23750 - 23989 (+)
Type: pfam
Location: 23750 - 23989 (+)
Gene ID: HRGMv2_2941_11_29
Type: TC
Location: 24066 - 24764 (+)
Type: TC
Location: 24066 - 24764 (+)
Gene ID: HRGMv2_2941_11_30
Type: TC
Location: 24761 - 25093 (+)
Type: TC
Location: 24761 - 25093 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
F23-B02
Species
F23-B02 sp004553495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2941_11_26 | vegetarian > omnivore | 1.41552 | 0.00455 |
| HRGMv2_2941_11_28 | vegetarian > vegan | 1.67010 | 0.01054 |