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Cluster: HRGMv2_2941_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2941_9 HRGMv2_2941_9_56 60936 61502 + 2.A.107.1.2
pfam HRGMv2_2941_9 HRGMv2_2941_9_57 61502 62143 + VTT_dom
CAZyme HRGMv2_2941_9 HRGMv2_2941_9_58 62225 62983 - CE14
TC HRGMv2_2941_9 HRGMv2_2941_9_59 62980 64455 - 2.A.2.2.3
STP HRGMv2_2941_9 HRGMv2_2941_9_60 64669 65244 + Pribosyltran
pfam HRGMv2_2941_9 HRGMv2_2941_9_61 65584 66807 + Bmp
TC HRGMv2_2941_9 HRGMv2_2941_9_62 66951 68492 + 3.A.1.2.17
TC HRGMv2_2941_9 HRGMv2_2941_9_63 68482 69594 + 3.A.1.2.10
Gene ID: HRGMv2_2941_9_56
Type: TC
Location: 60936 - 61502 (+)
Gene ID: HRGMv2_2941_9_57
Type: pfam
Location: 61502 - 62143 (+)
Gene ID: HRGMv2_2941_9_58
Type: CAZyme
Location: 62225 - 62983 (-)
Gene ID: HRGMv2_2941_9_59
Type: TC
Location: 62980 - 64455 (-)
Gene ID: HRGMv2_2941_9_60
Type: STP
Location: 64669 - 65244 (+)
Gene ID: HRGMv2_2941_9_61
Type: pfam
Location: 65584 - 66807 (+)
Gene ID: HRGMv2_2941_9_62
Type: TC
Location: 66951 - 68492 (+)
Gene ID: HRGMv2_2941_9_63
Type: TC
Location: 68482 - 69594 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2941_9_59 vegetarian > vegan 1.06858 0.01054

🧭 Explore Read Mapping of CGC

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