Cluster: HRGMv2_2940_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2940
- CGC Family ID: CGCFAM_00761
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2940_10 | HRGMv2_2940_10_1 | 209 | 1981 | - | 2.A.58.2.2 |
| pfam | HRGMv2_2940_10 | HRGMv2_2940_10_2 | 2394 | 3968 | + | SLH | SLH | SLH |
| TC | HRGMv2_2940_10 | HRGMv2_2940_10_3 | 4132 | 12180 | + | 1.C.39.4.6 |
| pfam | HRGMv2_2940_10 | HRGMv2_2940_10_4 | 12238 | 13518 | - | Patatin |
| CAZyme | HRGMv2_2940_10 | HRGMv2_2940_10_5 | 13502 | 16981 | - | GH13_39 | GT5 |
| CAZyme | HRGMv2_2940_10 | HRGMv2_2940_10_6 | 16996 | 18876 | - | CBM48 | GH13_9 |
Gene ID: HRGMv2_2940_10_1
Type: TC
Location: 209 - 1981 (-)
Type: TC
Location: 209 - 1981 (-)
Gene ID: HRGMv2_2940_10_2
Type: pfam
Location: 2394 - 3968 (+)
Type: pfam
Location: 2394 - 3968 (+)
Gene ID: HRGMv2_2940_10_3
Type: TC
Location: 4132 - 12180 (+)
Type: TC
Location: 4132 - 12180 (+)
Gene ID: HRGMv2_2940_10_4
Type: pfam
Location: 12238 - 13518 (-)
Type: pfam
Location: 12238 - 13518 (-)
Gene ID: HRGMv2_2940_10_5
Type: CAZyme
Location: 13502 - 16981 (-)
Type: CAZyme
Location: 13502 - 16981 (-)
Gene ID: HRGMv2_2940_10_6
Type: CAZyme
Location: 16996 - 18876 (-)
Type: CAZyme
Location: 16996 - 18876 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-103
Species
CAG-103 sp004556965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2940_10_4 | vegetarian > omnivore | 1.20659 | 0.00050 |